CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:365..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.856e-20
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   22 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            GK+KIGINGFGRIGRLV R  + R D+E+VA+NDPFI  +YM YMFKYDSVH  W  H    KD    L   + +  F   +P +I W
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVHKTWPGHVNGSKDG--FLVEGRKIHTFTESDPSKINW 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.856e-20
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            ++GINGFGRIGR+V R  L   +V++VA+NDPFI  +YM YMFKYDSVHG+++   ++ KD K ++ G K ++VF  R+P +IPW
Sbjct:    4 QVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQ-GTVEAKDGKLVVNG-KEISVFSERDPAQIPW 86          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.954e-20
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            V + +NGFGRIGRLV R+ + R D+ LVA+NDPFI+TDY  YMFKYDS HG++   E+    D  +L G+K V VF  ++P  +PW +
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHGRF-DGEVSHDKDHIILNGKK-VAVFNEKDPAALPWGK 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.954e-20
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G KP+T+F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KPITIFQERDPANIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.954e-20
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            V++ INGFGRIGRLV R+ LQR +VE+VA+NDPFI+ DY  YMFKYDS HG++        DDK ++     +  F  R+P  +PWA
Sbjct:    2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYAGE--VSHDDKHIIVDGHKIATFQERDPANLPWA 86          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.169e-19
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+ INGFGRIGRLV R+ LQR  +E+VAVNDPFI+ DY  YMFKYDS HG++K  E+    +  ++ G K + VF  ++P  +PW +
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHGRYK-GEVTTSGNDLVIDGHK-IAVFQEKDPANLPWGK 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VKIG+NGFGRIGRLV R     D V++VA+NDPFI  +YM YMFKYDS HG++ H  +K ++ K ++ G+  +T+F  R+P  I W +
Sbjct:    2 VKIGVNGFGRIGRLVTRAAFTCDKVQIVAINDPFIDLNYMVYMFKYDSTHGRF-HGTVKAENGKLVINGQ-AITIFQERDPANIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R     D V++VA+NDPFI  +YM YMF+YDS HG++ +  +K ++ K ++ G KP+T+F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFSCDKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KPITIFQERDPANIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+GINGFGRIGR+V R  ++ DDVE+VAVNDPFI T Y  YM KYDS HGQ+K  +++      L    K +  +  R+P  IPW +
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFK-GDIQHSSSNNLTVNNKTIHFYQERDPANIPWGK 89          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 49/87 (56.32%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            KIGINGFGRIGRLV R  L+    ++VAVNDPFI  +YM YMFKYDS HG +K  E+K +D   ++ G+K +TVF    PE IPW++
Sbjct:    2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAEDGALVVDGKK-ITVFNEMKPENIPWSK 85          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3PC_CHLRE6.856e-2053.41Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_RHIRA6.856e-2052.94Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_ZYGRO8.954e-2051.14Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_FELCA8.954e-2050.00Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P2_YEAST8.954e-2051.72Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P1_KLULA1.169e-1952.27Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_TRISI1.527e-1951.14Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_RAT1.527e-1950.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_PARBA1.527e-1951.14Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_PANVR1.527e-1956.32Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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