CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:365..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.880e-18
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  D+   + G K V  +  R+P  IPWAE
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSDNGLDVDG-KHVRFYQERDPANIPWAE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.762e-18
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   +T+F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVING-NAITIFQERDPSNIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.762e-18
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W
Sbjct:    1 MTKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQW 92          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.762e-18
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W
Sbjct:    1 MPKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQW 92          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.913e-18
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+GINGFGRIGR+V R  ++ +DV++VAVNDPFI   Y  YM KYDS HGQ+K  ++KV D   L    K +     ++P  IPW+E
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKV-DGNNLTVNGKTIRFHMEKDPANIPWSE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.417e-18
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M  +K+GINGFGRIGR+V R  ++  DVE+VAVNDPFI T Y  YM KYDS HG +       +D   L+   K V  +  R+P  IPW E
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGE--IAQDGNDLVINGKKVKFYTERDPAVIPWKE 89          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.381e-18
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M +V IGINGFGRIGR+V R  +  +   +VA+NDPFI  +YM YM KYDS HG + + ++  KD K ++ G K + VF  ++P  IPW +
Sbjct:    1 MSQVNIGINGFGRIGRIVFRNSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVF-NGDISTKDGKLIVNG-KSIAVFAEKDPSNIPWGQ 89          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.381e-18
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M  +K+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG + + E+K ++   L+   K V  +  R+P  IPW E
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIF-NGEIK-QEGNDLVINGKTVKFYTERDPAAIPWKE 89          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.381e-18
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+GINGFGRIGR+V R  ++  +VE+VAVNDPFI T Y  YM KYDS HG++K  ++K  ++   + G K V  +  R+P  IPWAE
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFK-GDVKFSENGLDVDG-KHVRFYQERDPANIPWAE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 8.381e-18
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ +  +K ++ K ++ G K +T+F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KAITIFQERDPANIKWGD 87          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3P_COCIM2.880e-1853.41Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COTJA3.762e-1848.86Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P3_CAEEL3.762e-1848.96Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL3.762e-1848.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_COCHE4.913e-1851.14Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_COLLN6.417e-1849.45Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_USTMA8.381e-1847.25Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_COLGL8.381e-1849.45Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_COCP78.381e-1852.27Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_BOVIN8.381e-1847.73Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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