CF503817

Overview
NameCF503817
Unique NameCF503817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length407
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7217 contig Csv1_Contig7217:536..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: ACON_CORJK (Aconitate hydratase OS=Corynebacterium jeikeium (strain K411) GN=acn PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.155e-43
Identity = 79/133 (59.40%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    7 GLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 405
            GL+  PWVKTS+APGS VV  Y  ++GL K L   GF++VGYGCTTCIGNSG L E +++ I + D+ A AVLSGNRNFEGR++P  + NYLASP LV+AYA+AGT+D DF+ +P+G  +DG  V+ KDIWP+
Sbjct:  495 GLKSAPWVKTSMAPGSQVVNGYYEKAGLWKDLEAMGFYLVGYGCTTCIGNSGPLPEEISAGINEGDLAATAVLSGNRNFEGRINPDVKMNYLASPILVIAYAIAGTMDFDFETQPLGQDQDGNDVFLKDIWPS 627          
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: ACON_FRATH (Aconitate hydratase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=acn PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.179e-42
Identity = 85/135 (62.96%), Postives = 102/135 (75.56%), Query Frame = 1
Query:    1 ELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 405
            E GL+VKP+VKTSLAPGS VVT+YL ++ L   L   GF++VGYGCTTCIGNSG LDE V  AI + D++ A+V SGNRNFEGR++P  +ANYLASP  VVAYALAGTVD D  ++ IG   +G  VY  DIWPT
Sbjct:  460 EKGLKVKPFVKTSLAPGSQVVTQYLEKANLLPELENLGFNLVGYGCTTCIGNSGPLDEPVVEAINEADLIVASVSSGNRNFEGRINPHIKANYLASPIHVVAYALAGTVDFDPVEDAIGKDAEGNDVYLADIWPT 594          
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: ACON_MYCAV (Aconitate hydratase OS=Mycobacterium avium GN=acn PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.844e-41
Identity = 82/132 (62.12%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 ELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDI 396
            E GL  KPWVKT++APGS VV  Y  ++GL  YL + GF++VGYGCTTCIGNSG L E ++ AI DND+   AVLSGNRNFEGR++P  + NY ASPPLVVAYALAGT+    +K+P+G  KDG  VY KDI
Sbjct:  520 EKGLASKPWVKTTMAPGSQVVHDYYDKAGLWPYLEKLGFYLVGYGCTTCIGNSGPLPEEISKAINDNDLSVTAVLSGNRNFEGRINPDVKMNYPASPPLVVAYALAGTM-TRLEKQPLGKDKDGNDVYLKDI 650          
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: ACON_CORGL (Aconitate hydratase OS=Corynebacterium glutamicum GN=acn PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.409e-41
Identity = 77/135 (57.04%), Postives = 100/135 (74.07%), Query Frame = 1
Query:    1 ELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 405
            E GL+ KPWVKT  APGS VV  Y  ++ L K L   GF++ G+GCTTCIGNSG L E +++AI ++D+ A AVLSGNRNFEGR+ P  + NYLASP +V+AYA+AGT+D DF+ E +G  +DG  V+ KDIWP+
Sbjct:  496 EKGLKSKPWVKTICAPGSQVVDGYYQRADLWKDLEAMGFYLSGFGCTTCIGNSGPLPEEISAAINEHDLTATAVLSGNRNFEGRISPDVKMNYLASPIMVIAYAIAGTMDFDFENEALGQDQDGNDVFLKDIWPS 630          
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: ACON_CORDI (Aconitate hydratase OS=Corynebacterium diphtheriae GN=acn PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.109e-41
Identity = 76/133 (57.14%), Postives = 98/133 (73.68%), Query Frame = 1
Query:    7 GLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 405
            GL+ KPWVKT  APGS VV  Y  ++ L K L   GF++ G+GCTTCIGNSG L E +++AI +ND+ A AVLSGNRNFEGR+ P  + NYL SP +V+AYA+AGT+D DF+ +P+G   DG  V+ KDIWP+
Sbjct:  496 GLKAKPWVKTICAPGSQVVDGYYKRADLWKDLEALGFYLSGFGCTTCIGNSGPLPEEISAAINENDLTATAVLSGNRNFEGRISPDVKMNYLVSPIMVIAYAIAGTMDFDFETQPLGQDIDGNDVFLKDIWPS 628          
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: ACON_COREF (Aconitate hydratase OS=Corynebacterium efficiens GN=acn PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 5.366e-41
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 1
Query:    1 ELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 405
            E GL+ KPWVKT  APGS VV  Y  ++ L K L   GF++ G+GCTTCIGNSG L E ++ AI ++D+ A AVLSGNRNFEGR+ P  + NYLASP +V+AYA+AGT+D DF+ E +G  +DG  V+ KDIWP+
Sbjct:  496 EKGLKSKPWVKTICAPGSQVVDGYYQRADLWKDLEALGFYLSGFGCTTCIGNSGPLPEEISEAINEHDLAATAVLSGNRNFEGRISPDVKMNYLASPIMVIAYAIAGTMDFDFENEALGQDQDGNDVFLKDIWPS 630          
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: IREB2_XENLA (Iron-responsive element-binding protein 2 OS=Xenopus laevis GN=ireb2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.663e-40
Identity = 76/135 (56.30%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 ELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 405
            E GL VKP++KTSL+PGSG VT YL  SG+  YL++ GF I+GYGC  C+GN+  L ES+ +AI + ++VA  V SGN++FEG       ANYLASPPLVVAYALAGTV+ID   EP+G    GK ++ +DIWP+
Sbjct:  525 EAGLTVKPYIKTSLSPGSGTVTYYLSASGVLPYLSKLGFDIIGYGCARCVGNTNPLPESIVTAIKEGELVACGVFSGNKHFEGNRCSCVCANYLASPPLVVAYALAGTVNIDLQTEPLGENAQGKKIFLQDIWPS 659          
BLAST of CF503817 vs. ExPASy Swiss-Prot
Match: IREB2_XENTR (Iron-responsive element-binding protein 2 OS=Xenopus tropicalis GN=ireb2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.023e-39
Identity = 74/135 (54.81%), Postives = 97/135 (71.85%), Query Frame = 1
Query:    1 ELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASAITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPT 405
            E GL VKP++KTSL+PGSG VT YL  SG+  YL++ GF I+GYGC  C+GN+  L ES+ +AI + ++VA  V SGN++FEG       ANYLASPPLVVAYALAGTV+ID   E +G    G+ ++ +DIWP+
Sbjct:  527 EAGLTVKPYIKTSLSPGSGTVTYYLSASGVLPYLSKLGFDIIGYGCARCVGNTNPLPESIVTAIKEGELVACGVFSGNKHFEGNRCSCVCANYLASPPLVVAYALAGTVNIDLQTEALGENAQGEKIFLRDIWPS 661          
The following BLAST results are available for this feature:
BLAST of CF503817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ACON_CORJK1.155e-4359.40Aconitate hydratase OS=Corynebacterium jeikeium (s... [more]
ACON_FRATH2.179e-4262.96Aconitate hydratase OS=Francisella tularensis subs... [more]
ACON_MYCAV1.844e-4162.12Aconitate hydratase OS=Mycobacterium avium GN=acn ... [more]
ACON_CORGL2.409e-4157.04Aconitate hydratase OS=Corynebacterium glutamicum ... [more]
ACON_CORDI4.109e-4157.14Aconitate hydratase OS=Corynebacterium diphtheriae... [more]
ACON_COREF5.366e-4157.04Aconitate hydratase OS=Corynebacterium efficiens G... [more]
IREB2_XENLA2.663e-4056.30Iron-responsive element-binding protein 2 OS=Xenop... [more]
IREB2_XENTR5.023e-3954.81Iron-responsive element-binding protein 2 OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-304 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503817 ID=CF503817; Name=CF503817; organism=Citrus sinensis; type=EST; length=407bp
GAACTTGGTTTGCAGGTCAAGCCATGGGTTAAAACAAGTCTTGCCCCAGG
CTCAGGAGTTGTTACTAAATATTTACTCCAGAGTGGACTGCAAAAATATT
TAAATGAGCAAGGATTCCATATTGTTGGATATGGATGCACAACATGTATT
GGAAATTCAGGGGATCTGGATGAATCTGTTGCATCTGCTATTACTGACAA
TGACATTGTGGCAGCAGCTGTGCTTTCTGGAAACAGGAATTTTGAGGGTC
GTGTTCATCCCTTGACAAGAGCTAATTACCTTGCTTCTCCTCCTTTAGTT
GTGGCATATGCCCTTGCTGGCACGGTTGACATAGATTTTGATAAGGAGCC
GATTGGAACAACCAAGGATGGTAAGAGTGTTTATTTCAAGGATATCTGGC
CGACTAC
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