CF503820

Overview
NameCF503820
Unique NameCF503820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8093 contig Csv1_Contig8093:272..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.119e-14
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 2
Query:    8 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            +L +  W+  WW+TEA+P+  TS+ PL L P+  + + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I
Sbjct:   61 VLAITLWIATWWITEAIPIAATSLLPLILLPVGHVLNPEEVSAQYGNDIIFLFLGGFILAIAMERWNLHTRVALRI 136          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.701e-13
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   38 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            +W T+A+P+ +T++ PL LFP+ GI  A  V   Y+ D   L +G  +LA+AVEH+N+HKR+AL +
Sbjct:   48 FWCTDALPLAVTALLPLCLFPMMGIMEASEVGLEYLKDTNVLFIGGLLLAIAVEHWNLHKRIALRV 113          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.140e-13
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   38 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            +W TEA+P+ +T++ PL LFP+ GI  A  VA  Y+ D   L  G  ++A+AVEH+N+HKR+AL +
Sbjct:   48 FWCTEALPLAVTALFPLILFPMMGIVDASEVAVEYLKDSNLLFFGGLLVAIAVEHWNLHKRIALRV 113          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: INDY1_DROME (Protein I'm not dead yet OS=Drosophila melanogaster GN=Indy PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.018e-13
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   38 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            +W+TEA+P+ +TSM P+  FP+ GI S+D     Y  D + + +G  ++ALAVE+ N+HKRLAL +
Sbjct:   77 FWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRV 142          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.786e-12
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 2
Query:   41 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            W TEA+P+ +T++ P+ LFPL GI  A  V   Y  D   L +G  ++A+AVEH+N+HKR+AL +
Sbjct:   49 WCTEALPLAVTALFPIILFPLMGIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGV 113          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: S13A5_HUMAN (Solute carrier family 13 member 5 OS=Homo sapiens GN=SLC13A5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.788e-12
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 2
Query:   17 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLAL 229
            V+  +  +W TE +P+ +TS+ P+ LFPLF I  +  V   YM D   L LG  I+A+AVE +N+HKR+AL
Sbjct:   41 VIILMAIYWCTEVIPLAVTSLMPVLLFPLFQILDSRQVCVQYMKDTNMLFLGGLIVAVAVERWNLHKRIAL 111          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.865e-12
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   17 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI S+  VA +Y  D   L++G   LA ++E +N+HKR+AL +
Sbjct:   40 ILFVIATFWITEALPLSITALLPGLMFPMFGIMSSTHVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRM 112          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: NAD3_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 3 OS=Caenorhabditis elegans GN=nac-3 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.512e-11
Identity = 28/69 (40.58%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   29 VFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            +  +W++E +P+ +T+M P+ LFPL G+  A+T A  YM+D   L +G  I+A AVE  ++H+R+AL++
Sbjct:   84 IAVYWMSEVMPLAVTAMLPVVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALSV 152          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.579e-11
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   17 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI  +  VA +Y  D   L++G   LA ++E +N+HKR+AL +
Sbjct:   40 ILFVIAIFWITEALPLSITALLPGLMFPMFGIMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRM 112          
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: NAD1_CAEEL (Sodium-dependent low-affinity dicarboxylate transporter 1 OS=Caenorhabditis elegans GN=nac-1 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.746e-11
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   35 AWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLAL 229
            ++W+ EA+P+ IT+  P+ LFPLFGI  ++ VA +Y+ D   L +G  ++ALAVE   +H R+AL
Sbjct:   53 SYWVFEALPLAITAFIPMILFPLFGIMRSEEVARAYLPDTCFLFMGGLMVALAVEKCELHARVAL 117          
The following BLAST results are available for this feature:
BLAST of CF503820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
SDCS_STAS11.119e-1443.42Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A2_RABIT4.701e-1345.45Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A2_HUMAN6.140e-1346.97Solute carrier family 13 member 2 OS=Homo sapiens ... [more]
INDY1_DROME8.018e-1345.45Protein I'm not dead yet OS=Drosophila melanogaste... [more]
S13A2_MOUSE1.786e-1246.15Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A5_HUMAN6.788e-1245.07Solute carrier family 13 member 5 OS=Homo sapiens ... [more]
S13A1_RAT8.865e-1241.10Solute carrier family 13 member 1 OS=Rattus norveg... [more]
NAD3_CAEEL1.512e-1140.58Sodium-dependent high-affinity dicarboxylate trans... [more]
S13A1_MOUSE2.579e-1139.73Solute carrier family 13 member 1 OS=Mus musculus ... [more]
NAD1_CAEEL5.746e-1144.62Sodium-dependent low-affinity dicarboxylate transp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-307 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503820 ID=CF503820; Name=CF503820; organism=Citrus sinensis; type=EST; length=240bp
CAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTTGGTGGCTCACGG
AGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTGTTTCTGTTTCCT
CTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTCTTACATGGATGA
TGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTCTTGCCGTTGAGC
ACTACAACATTCACAAAAGATTGGCCTTAAATATAACCTA
back to top