CF503820

Overview
NameCF503820
Unique NameCF503820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8093 contig Csv1_Contig8093:272..511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503820 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.505e-11
Identity = 28/69 (40.58%), Postives = 46/69 (66.67%), Query Frame = 2 
Query:   29 VFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNI 235
            V  +WLTEA+P+ +T++ P  + P+FGI  +  VA +Y  D   L++G   LA ++E +N+HKR+AL +
Sbjct:   44 VATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKM 112
The following BLAST results are available for this feature:
BLAST of CF503820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
S13A1_HUMAN7.505e-1140.58Solute carrier family 13 member 1 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-307 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503820 ID=CF503820; Name=CF503820; organism=Citrus sinensis; type=EST; length=240bp
CAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTTGGTGGCTCACGG
AGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTGTTTCTGTTTCCT
CTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTCTTACATGGATGA
TGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTCTTGCCGTTGAGC
ACTACAACATTCACAAAAGATTGGCCTTAAATATAACCTA
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