CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.485e-54
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD   DLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDS--DLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.485e-54
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD   DLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDS--DLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.485e-54
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD   DLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDS--DLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.245e-54
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILH+QGGQCGNQIGSKFWEVICDEHG+D TGKY  +G  D QLERINVYYNEASGGRYVPRAVLMDLEPGTM+SIRSGP+G+IFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGIDQTGKYISEGGSDTQLERINVYYNEASGGRYVPRAVLMDLEPGTMESIRSGPFGKIFRPDNFVFGQSGAGNNWAKGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.245e-54
Identity = 97/107 (90.65%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD   DLQLERINVYYNEA GGR+VPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDS--DLQLERINVYYNEAGGGRFVPRAVLMDLEPGTMDSLRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.535e-54
Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y GD   DLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDGTGRYAGDS--DLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.442e-54
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G+   DLQLER+NVYYNEAS GRYVPRA+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNS--DLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.233e-53
Identity = 95/107 (88.79%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MR+ILHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD   DLQLERI+VYYNEASGGR+VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MRQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDS--DLQLERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.610e-53
Identity = 94/107 (87.85%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G    DLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYAG--TSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.747e-53
Identity = 93/107 (86.92%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEV+CDEHG+DPTG+Y G+   DLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNS--DLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB7_MAIZE2.485e-5490.65Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB5_ORYSJ2.485e-5490.65Tubulin beta-5 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_ELEIN2.485e-5490.65Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB_CICAR3.245e-5488.79Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB3_ELEIN3.245e-5490.65Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P... [more]
TBB4_WHEAT5.535e-5489.72Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB6_ARATH9.442e-5487.85Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB1_PEA1.233e-5388.79Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB6_ORYSJ1.610e-5387.85Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB6_MAIZE2.747e-5386.92Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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