CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.781e-52
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G    DLQLER+NVYYNEAS GR+VP AVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG--TSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.326e-52
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_TETPY (Tubulin beta chain OS=Tetrahymena pyriformis GN=BETA-TT1 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.326e-52
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.326e-52
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.037e-52
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCG+QIG+KFWEVI DEHG+DPTG Y GD   DLQLER+NVYYNEA+GGRYVPRAVLMDLEPGTMDS+R+GPYGQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGDQIGAKFWEVISDEHGIDPTGTYNGDS--DLQLERVNVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 3.967e-52
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y+G+   DLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGEN--DLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.967e-52
Identity = 93/105 (88.57%), Postives = 99/105 (94.29%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            EI+HIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD   DLQLERINVYYNEAS GRYVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 EIVHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGD--TDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 103          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.967e-52
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+   +   DLQL+RINVYYNEASGGRYVPRAVLMDLEPGTMDS+++GP+GQIFRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSES--DLQLDRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_NOTCO (Tubulin beta-1 chain OS=Notothenia coriiceps neglecta GN=tubb1 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 3.967e-52
Identity = 92/107 (85.98%), Postives = 100/107 (93.46%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+DPTG Y GD   DLQL+RINVYYNEASGG+YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDS--DLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.181e-52
Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+QGGQCGNQIG+KFWEVI DEHGV+PTG Y GD   DLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVEPTGAYHGDS--DLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB8_MAIZE1.781e-5286.92Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]
TBB_TETTH2.326e-5285.05Tubulin beta chain OS=Tetrahymena thermophila GN=B... [more]
TBB_TETPY2.326e-5285.05Tubulin beta chain OS=Tetrahymena pyriformis GN=BE... [more]
TBB1_PARTE2.326e-5285.05Tubulin beta chain OS=Paramecium tetraurelia GN=bP... [more]
TBB4_OOMCK3.037e-5285.05Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB8_ARATH3.967e-5285.98Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_PEA3.967e-5288.57Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB2_DAUCA3.967e-5285.05Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB1_NOTCO3.967e-5285.98Tubulin beta-1 chain OS=Notothenia coriiceps negle... [more]
TBB_EUPOC5.181e-5285.05Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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