CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIGSKFWEVI DEHGVDPTG Y GD   DLQLERINVYY+EASGG+YVPR VL+DLEPGTMDS+R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGVDPTGSYHGDS--DLQLERINVYYSEASGGKYVPRCVLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_DROME (Tubulin beta-1 chain OS=Drosophila melanogaster GN=betaTub56D PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWE+I DEHG+D TG Y GD   DLQLERINVYYNEASGG+YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDS--DLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_CHICK (Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 4.386e-51
Identity = 89/107 (83.18%), Postives = 102/107 (95.33%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHGVDP+G+YRGD   +LQ+ERINVY+NEA+GGRYVPRA+L+DLEPGTMDS+R+GP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPSGEYRGDS--ELQIERINVYFNEAAGGRYVPRAILVDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.386e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEASGG+YVPRA L+DLEPGTMDS+R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDS--DLQLERINVYYNEASGGKYVPRACLVDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.386e-51
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE LHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD   +LQLERINVYYNEAS GR+V RAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDS--ELQLERINVYYNEASCGRFVRRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.386e-51
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323
            MREILH+QGGQCGNQIG+KFWEV+C EHG+DPTG YRGD   + QLER+NVYYNEAS GRYVPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKG
Sbjct:    1 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYRGDS--ETQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGHYGQIFRPDNFVFGQSGAGNNWAKG 104          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.728e-51
Identity = 88/107 (82.24%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+QGGQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINV+YNEA+GGR+VPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGDS--DLQLERINVFYNEATGGRFVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.728e-51
Identity = 89/107 (83.18%), Postives = 101/107 (94.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+QGGQCGNQIG+KFWEVI DEHG+ PTG Y+GD   DLQLERI+V+YNEA+GGRYVPRAVLMDLEPGTMDS+RSGP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGDS--DLQLERISVFYNEATGGRYVPRAVLMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.728e-51
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+DPTG Y GD   DLQLERIN Y+NEA+GGRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDS--DLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB1_ECHMU3.358e-5185.05Tubulin beta-1 chain OS=Echinococcus multiloculari... [more]
TBB1_DROME3.358e-5185.05Tubulin beta-1 chain OS=Drosophila melanogaster GN... [more]
TBB1_CHICK3.358e-5184.11Tubulin beta-1 chain OS=Gallus gallus PE=2 SV=1[more]
TBB_GIALA4.386e-5183.18Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]
TBB4_CAEEL4.386e-5184.11Tubulin beta-4 chain OS=Caenorhabditis elegans GN=... [more]
TBB2_SOYBN4.386e-5185.98Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB1_ANEPH4.386e-5185.85Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_TOXGO5.728e-5182.24Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBB_EIMTE5.728e-5183.18Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB5_ECTVR5.728e-5182.24Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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