CF503859

Overview
NameCF503859
Unique NameCF503859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length361
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: YBT1_YEAST (ATP-dependent bile acid permease OS=Saccharomyces cerevisiae GN=YBT1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.946e-16
Identity = 43/119 (36.13%), Postives = 72/119 (60.50%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDML-SNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+ QHF+ET+ G TTIR+F  E RF+  N+  +D  ++P F++  A  WL FR+DM+ S + F   L  L +I    +D  +AG+++TY ++       L+ L  ++E  + SVER+
Sbjct: 1237 RSPIYQHFSETLVGVTTIRAFGDEGRFMQENLHKIDENNKPFFYLWVANRWLAFRIDMIGSLVIFGAGLFILFNINN--LDSGMAGISLTYAISFTEGALWLVRLYSEVEMNMNSVERV 1353          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: ABCC8_DICDI (ABC transporter C family member 8 OS=Dictyostelium discoideum GN=abcC8 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.498e-14
Identity = 35/118 (29.66%), Postives = 69/118 (58.47%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF+ET++G TTIR+F   +RF+  N  L+D   +  +   ++  WL  RL+ L     + ++++ + + +  I+   AGL +TY L +      ++ ++C +EN ++S+ERI
Sbjct: 1200 RSPIYAHFSETLAGVTTIRAFKDVARFVTENERLLDENQKCYYINISSNRWLAIRLEFLGACLVSCAVLYTV-LARSRIEAGTAGLVITYALAITGNMNWMVRMSCDLENSVVSIERI 1316          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: VMR1_YEAST (ABC transporter ATP-binding protein/permease VMR1 OS=Saccharomyces cerevisiae GN=VMR1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.261e-14
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDML-SNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            K+P+ QHF+ET+ G  TIR+F  E RFI  NM  +D  +R  F+++  ++W  FR+DM+ + I  A     L++I    ID  +AG+++TY +   +    L+ L    E  + SVER+
Sbjct: 1174 KSPIFQHFSETLVGVCTIRAFGDERRFILENMNKIDQNNRAFFYLSVTVKWFSFRVDMIGAFIVLASGSFILLNIAN--IDSGLAGISLTYAILFTDGALWLVRLYSTFEMNMNSVERL 1290          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP5_HUMAN (Multidrug resistance-associated protein 5 OS=Homo sapiens GN=ABCC5 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P + H   ++ G  TI ++++   F+    EL+D    P F    AM WL  RLD++S I    +   +I +  G I PA AGLA++Y + L  L    + LA + E +  SVERI
Sbjct: 1047 QSPFLSHITSSIQGLATIHAYNKGQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALITTTGLMIVLMHGQIPPAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERI 1163          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: ABCCA_DICDI (ABC transporter C family member 10 OS=Dictyostelium discoideum GN=abcC10 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.153e-13
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF+ET++G  +IR++ ++   I  N + +D  +     + A   WLG RLD L+N+   F+ +F I+I K  I PA  GLA+ Y L+L          A   E K+ SVERI
Sbjct:  908 RSPIFNHFSETLNGVVSIRAYKKQQENILINQKRLDDNNNCYLTLQAMNRWLGLRLDFLANLITFFACIF-ITIDKDTISPANVGLALGYALSLTGNLNYAALQAADTETKMNSVERI 1024          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP5_RAT (Multidrug resistance-associated protein 5 OS=Rattus norvegicus GN=Abcc5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P + H   ++ G  TI ++++   F+    EL+D    P F    AM WL  RLD++S I    +   +I +  G I  A AGLA++Y + L  L    + LA + E +  SVERI
Sbjct: 1046 QSPFLSHITSSIQGLATIHAYNKRQEFLHRYQELLDDNQAPFFLFTCAMRWLAVRLDLIS-IALITTTGLMIVLMHGQIPSAYAGLAISYAVQLTGLFQFTVRLASETEARFTSVERI 1162          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: ABCCC_DICDI (ABC transporter C family member 12 OS=Dictyostelium discoideum GN=abcC12 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 39/118 (33.05%), Postives = 66/118 (55.93%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF+ET++G  +IR++ ++   I  N + +D  +     + A   WLG RLD L N+   FS +F I++ K  I P+  GL ++Y L++ +     +  A   E K+ SVERI
Sbjct:  902 RSPIFNHFSETLNGVVSIRAYKKQQENILKNQKRLDDNNNCYLTLQAMNRWLGLRLDFLGNLIVFFSCIF-ITLKKDTISPSDVGLVLSYALSITSNLNQGVLQAADTETKMNSVERI 1018          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP1_CHICK (Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.338e-12
Identity = 35/118 (29.66%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF ET+ G + IR+F+++ RFI  N   +D   +  +    A  WL  RL+ + N    F+ +F + I +  + P + GL+V+Y L +      L+ +   +E  I++VER+
Sbjct: 1142 RSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMKVDENQKAYYPSIVANRWLAVRLEFVGNCIVLFAALFAV-IARNKLSPGLIGLSVSYSLQITAYLNWLVRMTSDLETNIVAVERV 1258          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: ABCC3_DICDI (ABC transporter C family member 3 OS=Dictyostelium discoideum GN=abcC3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.054e-12
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF+ET+ G  +IR++ ++   I TN   +D  ++    + A  +WLG RLD+L+N+   F+ +F I+I +  I  A  GL+++Y L+L          A   E K+ SVERI
Sbjct:  917 RSPIFSHFSETLGGVVSIRAYRKKEENILTNQFRLDNNNKCYLTLQAMNQWLGLRLDLLANLVTFFACLF-ITIDRDTISAANVGLSLSYALSLTGNLNRATLQAADTETKMNSVERI 1033          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP7_HUMAN (Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.209e-12
Identity = 36/118 (30.51%), Postives = 68/118 (57.63%), Query Frame = 3
Query:    6 APLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDML-SNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            +PL  H A+T++G + +R+     RF + N+ L++   R  F  +A M+WL  RL ++ + +  A + + L+   +G  +P + GL+++Y L+L  L + L+    Q E  ++SVER+
Sbjct: 1101 SPLYSHLADTLAGLSVLRATGATYRFEEENLRLLELNQRCQFATSATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGLANPGLVGLSLSYALSLTGLLSGLVSSFTQTEAMLVSVERL 1218          
The following BLAST results are available for this feature:
BLAST of CF503859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
YBT1_YEAST5.946e-1636.13ATP-dependent bile acid permease OS=Saccharomyces ... [more]
ABCC8_DICDI2.498e-1429.66ABC transporter C family member 8 OS=Dictyostelium... [more]
VMR1_YEAST4.261e-1436.13ABC transporter ATP-binding protein/permease VMR1 ... [more]
MRP5_HUMAN2.115e-1333.90Multidrug resistance-associated protein 5 OS=Homo ... [more]
ABCCA_DICDI6.153e-1335.59ABC transporter C family member 10 OS=Dictyosteliu... [more]
MRP5_RAT1.050e-1233.05Multidrug resistance-associated protein 5 OS=Rattu... [more]
ABCCC_DICDI1.050e-1233.05ABC transporter C family member 12 OS=Dictyosteliu... [more]
MRP1_CHICK2.338e-1229.66Multidrug resistance-associated protein 1 OS=Gallu... [more]
ABCC3_DICDI3.054e-1233.90ABC transporter C family member 3 OS=Dictyostelium... [more]
MRP7_HUMAN5.209e-1230.51Multidrug resistance-associated protein 7 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-346 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503859 ID=CF503859; Name=CF503859; organism=Citrus sinensis; type=EST; length=361bp
GCAAAGCTCCATTAATACAGCATTTTGCAGAAACTGTTTCCGGGTCAACC
ACTATCAGGAGCTTTGATCAAGAATCAAGGTTTATAGACACAAACATGGA
ACTGATGGATGGATATTCTCGACCAACATTCCATGTTGCTGCTGCCATGG
AATGGCTTGGCTTTCGCCTGGATATGTTGTCTAACATCACATTTGCCTTC
TCTTTGGTTTTCTTAATCTCCATTCCGAAGGGATTTATTGATCCAGCAAT
TGCTGGCCTAGCTGTGACATATGGACTCACCCTAAATAACTTACAAGCTA
TGTTAATATGGCTTGCTTGCCAAATGGAGAACAAGATTATATCAGTTGAG
AGAATTTTTCA
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