CF503859

Overview
NameCF503859
Unique NameCF503859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length361
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: AB13C_ARATH (ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.803e-12
Identity = 38/123 (30.89%), Postives = 64/123 (52.03%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLI-----SIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+   F ET+ GS+TIR+F  E  F+   +E +  Y R ++    A  WL  RL +L ++   F  V  +     + P  F  P + GLA++Y   L +L   L+    + E +++SVER+
Sbjct:  809 RSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERV 931          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP3_RAT (Canalicular multispecific organic anion transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.979e-11
Identity = 34/118 (28.81%), Postives = 66/118 (55.93%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF+ETV+G++ IR++ +   F   +   +D   + T+   A+  WLG  ++ + N    FS +F + I +  ++P + GL+V+Y L +      +I     +E+ II+VER+
Sbjct: 1139 RSPIFSHFSETVTGTSVIRAYGRVQDFKVLSDAKVDSNQKTTYPYIASNRWLGVHVEFVGNCVVLFSALFAV-IGRNSLNPGLVGLSVSYALQVTLSLNWMIRTLSDLESNIIAVERV 1255          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: ABCC5_DICDI (ABC transporter C family member 5 OS=Dictyostelium discoideum GN=abcC5 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.979e-11
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTL-NNLQAMLIWLACQMENKIISVERI 356
            ++P+  HFAET++G  T+R+F +    +  N  L+D  ++    + A  +WLG RL +L N+    S +F I++ +  I  A  GL+++Y L+L  NL      LA ++E K+ S+ERI
Sbjct: 1058 RSPIFSHFAETLNGVITLRAFRKMGENVLKNQALLDDNNKCYLTLQAMNQWLGLRLSVLGNLITLLSCIF-ITVDRSSIAIASVGLSISYTLSLTTNLNKATQQLA-ELETKMNSIERI 1174          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP2_HUMAN (Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.585e-11
Identity = 34/118 (28.81%), Postives = 63/118 (53.39%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF+ETVSG   IR+F+ + RF+  N   +D   +  F    +  WL  RL+++ N+T  FS + ++ I +  +     G  ++  L +      L+ +  ++E  I++VERI
Sbjct: 1156 RSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWITSNRWLAIRLELVGNLTVFFSALMMV-IYRDTLSGDTVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERI 1272          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP1_MACFA (Multidrug resistance-associated protein 1 OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.585e-11
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF ET+ G + IR+F+++ RFI  +   +D   +  +    A  WL  RL+ + N    F+ +F + I +  +   + GL+V+Y L +      L+ ++ +ME  I++VER+
Sbjct: 1148 RSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERL 1264          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP1_HUMAN (Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.585e-11
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF ET+ G + IR+F+++ RFI  +   +D   +  +    A  WL  RL+ + N    F+ +F + I +  +   + GL+V+Y L +      L+ ++ +ME  I++VER+
Sbjct: 1148 RSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERL 1264          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP1_MOUSE (Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.376e-11
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF ET+ G + IR+F+++ RFI  +   +D   +  +    A  WL  RL+ + N    F+ +F + I +  +   + GL+V+Y L +      L+ ++ +ME  I++VER+
Sbjct: 1145 RSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQITAYLNWLVRMSSEMETNIVAVERL 1261          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP3_MOUSE (Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 32/118 (27.12%), Postives = 67/118 (56.78%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF+ETV+G++ IR++ +   F   +   +D   + ++   A+  WLG  ++ + N    F+ +F + I +  ++P + GL+V+Y L +      +I +   +E+ II+VER+
Sbjct: 1140 RSPIFSHFSETVTGTSVIRAYGRIQDFKVLSDTKVDNNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAV-IGRNSLNPGLVGLSVSYALQVTMALNWMIRMISDLESNIIAVERV 1256          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP1_RAT (Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF ET+ G + IR+F+++ RFI  +   +D   +  +    A  WL  RL+ + N    F+ +F + I +  +   + GL+V+Y L +      L+ ++ +ME  I++VER+
Sbjct: 1149 RSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAV-ISRHSLSAGLVGLSVSYSLQITAYLNWLVRMSSEMETNIVAVERL 1265          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP1_CANFA (Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF ET+ G + IR+F+++ RFI  +   +D   +  +    A  WL  RL+ + N    F+ +F + I +  +   + GL+V+Y L +      L+ ++ +ME  I++VER+
Sbjct: 1148 RSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFSV-ISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERL 1264          
The following BLAST results are available for this feature:
BLAST of CF503859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
AB13C_ARATH6.803e-1230.89ABC transporter C family member 13 OS=Arabidopsis ... [more]
MRP3_RAT1.979e-1128.81Canalicular multispecific organic anion transporte... [more]
ABCC5_DICDI1.979e-1134.45ABC transporter C family member 5 OS=Dictyostelium... [more]
MRP2_HUMAN2.585e-1128.81Canalicular multispecific organic anion transporte... [more]
MRP1_MACFA2.585e-1128.81Multidrug resistance-associated protein 1 OS=Macac... [more]
MRP1_HUMAN2.585e-1128.81Multidrug resistance-associated protein 1 OS=Homo ... [more]
MRP1_MOUSE3.376e-1128.81Multidrug resistance-associated protein 1 OS=Mus m... [more]
MRP3_MOUSE4.410e-1127.12Canalicular multispecific organic anion transporte... [more]
MRP1_RAT4.410e-1128.81Multidrug resistance-associated protein 1 OS=Rattu... [more]
MRP1_CANFA4.410e-1128.81Multidrug resistance-associated protein 1 OS=Canis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-346 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503859 ID=CF503859; Name=CF503859; organism=Citrus sinensis; type=EST; length=361bp
GCAAAGCTCCATTAATACAGCATTTTGCAGAAACTGTTTCCGGGTCAACC
ACTATCAGGAGCTTTGATCAAGAATCAAGGTTTATAGACACAAACATGGA
ACTGATGGATGGATATTCTCGACCAACATTCCATGTTGCTGCTGCCATGG
AATGGCTTGGCTTTCGCCTGGATATGTTGTCTAACATCACATTTGCCTTC
TCTTTGGTTTTCTTAATCTCCATTCCGAAGGGATTTATTGATCCAGCAAT
TGCTGGCCTAGCTGTGACATATGGACTCACCCTAAATAACTTACAAGCTA
TGTTAATATGGCTTGCTTGCCAAATGGAGAACAAGATTATATCAGTTGAG
AGAATTTTTCA
back to top