CF503859

Overview
NameCF503859
Unique NameCF503859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length361
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP1_BOVIN (Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 34/118 (28.81%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            ++P+  HF ET+ G + IR+F+++ RFI  +   +D   +  +    A  WL  RL+ + N    F+ +F + I +  +   + GL+V+Y L +      L+ ++ +ME  I++VER+
Sbjct: 1147 RSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFASLFAV-ISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERL 1263          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: NFT1_YEAST (ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 35/117 (29.91%), Postives = 64/117 (54.70%), Query Frame = 3
Query:    6 APLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            +P+ Q FAE + G TTIR+   E RFI  ++  +D  + P F++  A EW+ +R+D++  +   FS   +I +   ++D  +AG+ ++   +       +I +   +E  + SVERI
Sbjct: 1144 SPIHQLFAEAIKGVTTIRALADERRFITQSLVAIDRSNAPFFYLNMATEWITYRVDIIGTLVL-FSSSVMIIMKASYLDAGLAGILLSNAFSFTETAQWIIKVFSSVELLMSSVERI 1259          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP7_MOUSE (Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    6 APLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDML-SNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            +PL  H A+T++G   +R+     RF + N  L++   R  F   A M+WL  RL ++ + +  A + + L+   +G  +P + GL ++Y L+L  L + L+    Q E  ++SVER+
Sbjct: 1106 SPLYSHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGLANPGLVGLVLSYALSLTGLLSGLVSSFTQTEAMMVSVERL 1223          
BLAST of CF503859 vs. ExPASy Swiss-Prot
Match: MRP2_MOUSE (Canalicular multispecific organic anion transporter 1 OS=Mus musculus GN=Abcc2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.824e-11
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 3
Query:    3 KAPLIQHFAETVSGSTTIRSFDQESRFIDTNMELMDGYSRPTFHVAAAMEWLGFRLDMLSNITFAFSLVFLISIPKGFIDPAIAGLAVTYGLTLNNLQAMLIWLACQMENKIISVERI 356
            K+P+  HF+ETVSG   IR+F+ + RF+  + + +D   +  F    +  WL  RL+++ N+   F    L+ I K  +     G  ++  L +      L+ +  ++E  I++VERI
Sbjct: 1154 KSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQIDTNQKCVFSWITSNRWLAIRLELVGNL-IVFCSALLLVIYKNSLTGDTVGFVLSNALNITQTLNWLVRMTSEVETNIVAVERI 1270          
The following BLAST results are available for this feature:
BLAST of CF503859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
MRP1_BOVIN4.410e-1128.81Multidrug resistance-associated protein 1 OS=Bos t... [more]
NFT1_YEAST9.824e-1129.91ABC transporter NFT1 OS=Saccharomyces cerevisiae G... [more]
MRP7_MOUSE9.824e-1130.51Multidrug resistance-associated protein 7 OS=Mus m... [more]
MRP2_MOUSE9.824e-1128.81Canalicular multispecific organic anion transporte... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-346 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503859 ID=CF503859; Name=CF503859; organism=Citrus sinensis; type=EST; length=361bp
GCAAAGCTCCATTAATACAGCATTTTGCAGAAACTGTTTCCGGGTCAACC
ACTATCAGGAGCTTTGATCAAGAATCAAGGTTTATAGACACAAACATGGA
ACTGATGGATGGATATTCTCGACCAACATTCCATGTTGCTGCTGCCATGG
AATGGCTTGGCTTTCGCCTGGATATGTTGTCTAACATCACATTTGCCTTC
TCTTTGGTTTTCTTAATCTCCATTCCGAAGGGATTTATTGATCCAGCAAT
TGCTGGCCTAGCTGTGACATATGGACTCACCCTAAATAACTTACAAGCTA
TGTTAATATGGCTTGCTTGCCAAATGGAGAACAAGATTATATCAGTTGAG
AGAATTTTTCA
back to top