CF503868

Overview
NameCF503868
Unique NameCF503868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 2
Query:   20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            D  ++ + G L W  +++ L +AF     +L +KVI +R TGRSRGFGFVTF +   +  A++ MNG E++GR + +N A  R
Sbjct:    5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:   32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLPAA 292
            K++ G L WG     LRDAF     ++ AKVI +R TGRSRGFGFV F       +A+  M+G E+ GR +R+N AN+R  P  P A
Sbjct:   36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR--PSAPRA 120          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 31/84 (36.90%), Postives = 55/84 (65.48%), Query Frame = 2
Query:   20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 271
            +  ++IY GN+ WG+    L   F     ++SA+V+++R TGRSRGFGFVT  +  ++  A+  ++G  ++GR +R+N+A +R+
Sbjct:  227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            D  ++ + G L W   ++ L  AF     ++ +KVI +R TGRSRGFGFVTF + + +  A++ MNG E++GR + +N A  R
Sbjct:    5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 2
Query:   32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            ++Y GNL W + +  L   F     ++SA+V+ +R TGRSRGFGFVT  +  ++  A+ A++G  ++GR +R+N+A ER
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228          

HSP 2 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    8 QGFVDSPH--KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPP 277
            QGF + P   K++ GNL + + S+ L   F     +  A+VI+ R T RSRGFGFVT  T E+ + A++ +NG +++GR L +N A  R  P
Sbjct:   46 QGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSP 137          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            D  ++ + G L W    + L  AF     +L +K+I +R TGRSRGFGFVTF+  + ++ A++ MNG +++GR + +N A  R
Sbjct:    5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12
Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2
Query:   29 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            ++IY GN+ W +    L   F     ++SA+V+F+R +GRSRGFGFVT  +  ++  A+  ++G  ++GR +R+N A ER
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            D  ++ + G L W    + L  AF     L+ +K+I +R TGRSRGFGFVTF+  + ++ A++ MNG +++GR + +N A  R
Sbjct:    5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 34/82 (41.46%), Postives = 56/82 (68.29%), Query Frame = 2
Query:   14 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 259
            FV+SP+K+Y GNL   +T++ L+D F  +  +L AKV     T +S GFGFV+F + E++++A+ A+N   +EG+ +R+N A
Sbjct:  179 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 2
Query:   20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            + P  I+ G L W +  + L+  F+   G++ A+VI+ER T RSRG+G+V FE     + A+  M G E++GRP+  +M+  +
Sbjct:  165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247          
The following BLAST results are available for this feature:
BLAST of CF503868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GRPA_MAIZE9.463e-1440.96Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_ARATH9.463e-1445.98Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC4_NICSY1.614e-1336.9031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP2_SORBI6.134e-1339.76Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
ROC1_SPIOL8.011e-1340.5128 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
GRP1_SINAL1.046e-1238.55Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
ROC3_NICSY1.366e-1238.7528 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP2_SINAL1.785e-1238.55Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
RRP2_SPIOL2.331e-1241.4630S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
NSR1_YEAST2.331e-1236.14Nuclear localization sequence-binding protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-355 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503868 ID=CF503868; Name=CF503868; organism=Citrus sinensis; type=EST; length=412bp
CAGTTACCAGGGCTTTGTCGACAGCCCTCACAAGATCTATGCTGGAAATC
TTGGCTGGGGTCTGACTTCTCAGGGTTTAAGAGATGCTTTTCAGGGCCAG
CCAGGTTTATTGAGTGCCAAGGTTATCTTTGAGAGATACACTGGAAGATC
TCGAGGCTTTGGTTTTGTCACTTTTGAAACAGCAGAGGATTTACAATCTG
CTTTGGATGCCATGAACGGAGTGGAAGTCGAAGGGCGGCCCCTGCGATTG
AATATGGCAAATGAAAGAGCTCCTCCTGTTTTGCCGGCAGCAAAGGAAAC
GAAAACAGAAAACAGCATTGACGGCAGCGAATTGCTTTCTAGCATTAGCA
CATAAAGAAATATGGCATCAGAAATGTTTTAATCTACTAATGGATGGAGT
TTTTGCGGGAAA
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