CF503868
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14 Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 2 Query: 20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 D ++ + G L W +++ L +AF +L +KVI +R TGRSRGFGFVTF + + A++ MNG E++GR + +N A R Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14 Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLPAA 292 K++ G L WG LRDAF ++ AKVI +R TGRSRGFGFV F +A+ M+G E+ GR +R+N AN+R P P A Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR--PSAPRA 120
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13 Identity = 31/84 (36.90%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERA 271 + ++IY GN+ WG+ L F ++SA+V+++R TGRSRGFGFVT + ++ A+ ++G ++GR +R+N+A +R+ Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRS 310
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13 Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 2 Query: 20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 D ++ + G L W ++ L AF ++ +KVI +R TGRSRGFGFVTF + + + A++ MNG E++GR + +N A R Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13 Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 ++Y GNL W + + L F ++SA+V+ +R TGRSRGFGFVT + ++ A+ A++G ++GR +R+N+A ER Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEER 228 HSP 2 Score: 71.633 bits (174), Expect = 1.366e-12 Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 8 QGFVDSPH--KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPP 277 QGF + P K++ GNL + + S+ L F + A+VI+ R T RSRGFGFVT T E+ + A++ +NG +++GR L +N A R P Sbjct: 46 QGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSP 137
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12 Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 2 Query: 20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 D ++ + G L W + L AF +L +K+I +R TGRSRGFGFVTF+ + ++ A++ MNG +++GR + +N A R Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.366e-12 Identity = 31/80 (38.75%), Postives = 51/80 (63.75%), Query Frame = 2 Query: 29 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 ++IY GN+ W + L F ++SA+V+F+R +GRSRGFGFVT + ++ A+ ++G ++GR +R+N A ER Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12 Identity = 32/83 (38.55%), Postives = 51/83 (61.45%), Query Frame = 2 Query: 20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 D ++ + G L W + L AF L+ +K+I +R TGRSRGFGFVTF+ + ++ A++ MNG +++GR + +N A R Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12 Identity = 34/82 (41.46%), Postives = 56/82 (68.29%), Query Frame = 2 Query: 14 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMA 259 FV+SP+K+Y GNL +T++ L+D F + +L AKV T +S GFGFV+F + E++++A+ A+N +EG+ +R+N A Sbjct: 179 FVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12 Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 2 Query: 20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 + P I+ G L W + + L+ F+ G++ A+VI+ER T RSRG+G+V FE + A+ M G E++GRP+ +M+ + Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK 247 The following BLAST results are available for this feature:
BLAST of CF503868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503868 ID=CF503868; Name=CF503868; organism=Citrus sinensis; type=EST; length=412bpback to top |