CF503868

Overview
NameCF503868
Unique NameCF503868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 2
Query:   29 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            ++ + G L W    + L  AF     +  +K+I +R TGRSRGFGFVTF+  + ++ A++ MNG E++GR + +N A  R
Sbjct:    6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.044e-12
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 2
Query:   20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            D  ++ + G L W    + L  AF     ++ +K+I +R TGRSRGFGFVTF+  + ++ A++ MNG +++GR + +N A  R
Sbjct:    5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 2
Query:   32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLPAAKETKTENS 316
            K+Y G L  G     L+DAF    G+  A+V+  + TGRSRG+GFV F + +   SA+ AMNG E+ G  + +N+A +   P LP + +   E +
Sbjct:   32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDW--PSLPLSLDESIEEA 124          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   29 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            ++ + G L W      L   F     ++ +K+I +R TGRSRGFGFVTF+  + ++ A+D MNG E++GR + +N A  R
Sbjct:    6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.396e-11
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:   29 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268
            ++ + G L W    + L+  F     ++ +K+I +R +GRSRGFGFVTF+  + ++ A++ MNG E++GR + +N A  R
Sbjct:    6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: YKX5_SCHPO (Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe GN=SPAC328.05 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   35 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP-PVLP 286
            IY GNL W  + + L D F     ++ A++ +E  TGRS+GFG V FE   D  S+++ +NG    GRPL+L+ A+   P P +P
Sbjct:  316 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYATPLPAVP 399          
The following BLAST results are available for this feature:
BLAST of CF503868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GRP1_DAUCA2.331e-1238.75Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP7_ARATH3.044e-1237.35Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
RT19_ARATH1.511e-1137.8940S ribosomal protein S19, mitochondrial OS=Arabid... [more]
GRP10_BRANA1.973e-1138.75Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP8_ARATH4.396e-1136.25Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
YKX5_SCHPO5.741e-1140.00Uncharacterized RNA-binding protein C328.05 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-355 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503868 ID=CF503868; Name=CF503868; organism=Citrus sinensis; type=EST; length=412bp
CAGTTACCAGGGCTTTGTCGACAGCCCTCACAAGATCTATGCTGGAAATC
TTGGCTGGGGTCTGACTTCTCAGGGTTTAAGAGATGCTTTTCAGGGCCAG
CCAGGTTTATTGAGTGCCAAGGTTATCTTTGAGAGATACACTGGAAGATC
TCGAGGCTTTGGTTTTGTCACTTTTGAAACAGCAGAGGATTTACAATCTG
CTTTGGATGCCATGAACGGAGTGGAAGTCGAAGGGCGGCCCCTGCGATTG
AATATGGCAAATGAAAGAGCTCCTCCTGTTTTGCCGGCAGCAAAGGAAAC
GAAAACAGAAAACAGCATTGACGGCAGCGAATTGCTTTCTAGCATTAGCA
CATAAAGAAATATGGCATCAGAAATGTTTTAATCTACTAATGGATGGAGT
TTTTGCGGGAAA
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