CF503870

Overview
NameCF503870
Unique NameCF503870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length307
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9975 contig Csv1_Contig9975:23..329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF503870 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.162e-26
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:   52 KMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFV 306
            K+ K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++I  WNSD+LPIYEPGLD +V   RG+NLFFS+D+ K ++EAD++F+
Sbjct:    8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFI 92
The following BLAST results are available for this feature:
BLAST of CF503870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_CAEEL2.162e-2660.00UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-357 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503870 ID=CF503870; Name=CF503870; organism=Citrus sinensis; type=EST; length=307bp
TTTTGATTTTGAGAAATCGAAGCTCACTGAGGTTATATTGATTAGTAAAG
GAAAATGGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGGCCGA
CAATGGCAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGTTGTT
GATATCTCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCCCCAT
CTATGAGCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAGAACC
TGTTCTTCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATATTGTC
TTTGTTT
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