CF503928

Overview
NameCF503928
Unique NameCF503928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503928 vs. ExPASy Swiss-Prot
Match: CSLA5_ORYSJ (Probable mannan synthase 5 OS=Oryza sativa subsp. japonica GN=CSLA5 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.693e-36
Identity = 70/184 (38.04%), Postives = 110/184 (59.78%), Query Frame = 2
Query:   86 AFLVSTEQPGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFR-LCLPAIIKSKIPTWKKGNXXXXXXXXXXXXXPFYSFTLFCIILPLTMFIPEAELPVWVICYVPVFMSFLNILPAPKSFPFIGPYLLFENTMSVTKFNAMVSGL 634
            AF       GVWR +A+ ++GGW +RTTVEDMD+AVRA L GWKFI+L D++V  E+P +Y+AY +QQ RW  G   LFR +    ++  K+ + KK               P  +F L+ +I+P+++ IPE  LP+W + Y+P  +  +  +  P++   +  ++LFE+ MS+ +  A V+GL
Sbjct:  296 AFFSFNGTAGVWRTEAINDAGGWKDRTTVEDMDLAVRATLKGWKFIYLGDLRVKSELPSTYKAYCRQQFRWSCGGANLFRKMIWDVLVAKKVSSLKKIYILYSFFLVRRVVAPAVAFILYNVIIPVSVMIPELFLPIWGVAYIPTALLIVTAIRNPENLHTVPLWILFESVMSMHRLRAAVAGL 479          

HSP 2 Score: 28.1054 bits (61), Expect = 2.693e-36
Identity = 12/31 (38.71%), Postives = 18/31 (58.06%), Query Frame = 3
Query:    6 NLLTRLQNINLSFHFEVEQQVNRSISKLFWF 98
            +LLTR+Q   L +HF+ EQ+   +    F F
Sbjct:  270 SLLTRIQKTFLDYHFKAEQEAGSATFAFFSF 300          
BLAST of CF503928 vs. ExPASy Swiss-Prot
Match: CSLA7_ORYSJ (Probable mannan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLA7 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.507e-36
Identity = 70/184 (38.04%), Postives = 108/184 (58.70%), Query Frame = 2
Query:   86 AFLVSTEQPGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFR-LCLPAIIKSKIPTWKKGNXXXXXXXXXXXXXPFYSFTLFCIILPLTMFIPEAELPVWVICYVPVFMSFLNILPAPKSFPFIGPYLLFENTMSVTKFNAMVSGL 634
            AF       GVWR  A+ E+GGW +RTTVEDMD+AVRA LNGWKFI++ D++V  E+P +Y AY +QQ RW  G   LFR + +  ++   I   KK               P  +  L+ II+PL++ IPE  +P+W + Y+P+ +  +  +  P++   +  ++LFE+ M+V +  A ++GL
Sbjct:  311 AFFSFNGTAGVWRTTAINEAGGWKDRTTVEDMDLAVRASLNGWKFIYVGDIRVKSELPSTYGAYCRQQFRWACGGANLFRKIAMDVLVAKDISLLKKFYMLYSFFLVRRVVAPMVACVLYNIIVPLSVMIPELFIPIWGVAYIPMALLIITTIRNPRNLHIMPFWILFESVMTVLRMRAALTGL 494          

HSP 2 Score: 28.4906 bits (62), Expect = 3.507e-36
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 3
Query:    6 NLLTRLQNINLSFHFEVEQQVNRSISKLFWF 98
            +LLTR+Q +   +HF+VEQ+   +    F F
Sbjct:  285 SLLTRVQKMFFDYHFKVEQEAGSATFAFFSF 315          
The following BLAST results are available for this feature:
BLAST of CF503928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSLA5_ORYSJ2.693e-3638.04Probable mannan synthase 5 OS=Oryza sativa subsp. ... [more]
CSLA7_ORYSJ3.507e-3638.04Probable mannan synthase 7 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-416 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503928 ID=CF503928; Name=CF503928; organism=Citrus sinensis; type=EST; length=639bp
ATGAGAACTTGCTGACACGCCTCCAGAACATTAATTTGTCTTTTCATTTC
GAGGTGGAACAACAGGTTAACCGGAGTATTTCTAAGCTTTTTTGGTTTCA
ACGGAACAGCCTGGCGTCTGGAGAATTAAGGCCCTTGAAGAGTCTGGAGG
ATGGCTTGAAAGAACAACCGTAGAGGACATGGACATAGCTGTTCGTGCTC
ATCTCAATGGTTGGAAATTCATATTCCTTAATGATGTCAAGGTCCTTTGT
GAAGTTCCTGAGTCTTATGAAGCTTATAGAAAGCAGCAACATCGTTGGCA
TTCCGGCCCTATGCAACTTTTCCGCTTGTGTCTTCCAGCAATCATAAAAT
CTAAGATACCGACGTGGAAGAAAGGAAACTTAATACTGCTCTTCTTTCTA
TTGAGGAAACTTATACTTCCTTTCTATTCCTTCACATTGTTCTGCATAAT
TCTTCCTCTAACCATGTTCATACCCGAGGCAGAGCTTCCTGTGTGGGTCA
TTTGTTACGTTCCCGTTTTCATGTCATTCCTCAATATTCTTCCTGCCCCA
AAGTCCTTTCCTTTCATTGGGCCTTACCTCTTATTCGAGAACACTATGTC
AGTGACCAAATTCAATGCAATGGTATCTGGACTATTCCA
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