CF503936

Overview
NameCF503936
Unique NameCF503936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3768 contig Csv1_Contig3768:614..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.518e-23
Identity = 57/143 (39.86%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I+QFL  +  P   N YP+F + S+    +L++ LF    G   +G    Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G       ++ENA+ Y  NLI H++S AGTP  PGK+++TY+FA++DE+ K G  +E
Sbjct:  170 IIQFLARNNLPLLANVYPYFVHVSNTADVSLSYALFTQQ-GTNSAG----YQNLFDAILDSMYFAVEKAGGPNVEIIVSESGWPSEGSS---AATIENAQTYYRNLINHVKSGAGTPKKPGKTIETYLFAMFDENDKIGEITE 304          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 52/144 (36.11%), Postives = 85/144 (59.03%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSM--AGTPLMPGKSVDTYIFALYDEDLKPG 431
            M  +L+FL    S F +N +P+F +  +P   +L F LFQ ++   D  TG+ Y N+ D  +D+V  A+  +G+  + + ++ETGWP  GD +E G ++ NA  YN NLI  + +    GTP  PG  + T++F+L++E+ K G
Sbjct:  198 MLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQTGLVYRNLLDQMLDSVLFAMTKLGYPHMRLAISETGWPNFGDIDETGANILNAATYNRNLIKKMSASPPIGTPSRPGLPIPTFVFSLFNENQKSG 341          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.536e-23
Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            +R IL FL     P   N YP+FAY+ +PR   L F  F P +  V+   G+ Y N+FDA VD++++AL   G   V++V++E+GWP        G + +NA+AYN  LI H+ +  G+P   G ++++YIFA+++E+LK G   E
Sbjct:  174 LRPILNFLARPARPLLANVYPYFAYKGNPRDIQLTFATFVPGSTTVNDN-GLTYTNLFDAMVDSIYAALEKAGTPGVKVVISESGWP---SDQGFGATAQNARAYNQGLINHVGN--GSPKKAG-ALESYIFAMFNENLKDGDELE 312          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.740e-22
Identity = 56/143 (39.16%), Postives = 89/143 (62.24%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I+ FL ++GSP   N YP+F+Y  D +   L + LF  +   V  G+  +Y N+FDA +DA+++AL   G  +++IVV+E+GWP  G       +V+NA+ Y  NLI H++   GTP   G +++TY+FA++DE+ K G  +E
Sbjct:  132 IISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALFTASGVVVQDGS-YQYQNLFDALLDALYAALEKAGGSNLKIVVSESGWPSEGG---TAATVDNARTYYKNLINHVK--GGTPRKSG-AIETYLFAMFDENQKTGLETE 267          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.740e-22
Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLK 425
            I++FL  H SP  +N YP+FAY  + +   L + LF   +  V  G    Y N+FDA +D V++AL   G   +++V++ETGWP          +++NA+ +  NLI H++   GTP  PG+ ++TYIFA++DE+ K
Sbjct:  196 IIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALFTAPSVVVQDGN-FGYRNLFDAMLDGVYAALEKAGGGSLKVVISETGWPSAAG---TATTIDNARTFISNLIQHVKE--GTPRRPGRPIETYIFAMFDENRK 326          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.740e-22
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            M  + + L   G+P   N YP+FAY+ +P   +L +  FQP     D   G+ Y ++FDA VDAV++AL   G   V++VV+E+GWP  G       S  NA+ YN  LI H+    GTP    ++++TYIFA+++E+ K G  +E
Sbjct:  177 MTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGWPSAGG---FAASAGNARTYNQGLINHVG--GGTP-KKREALETYIFAMFNENQKTGDATE 316          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.740e-22
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRV-DSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            M  + + L   G+P   N YP+FAY+ +PR   L +  F+P    V D  TG+    +FDA VDAV +AL   G   V +VV+E+GWP     +    + +NA+AYN  LI H+    GTP  PG +++TYIFA+++E+ K G  +E
Sbjct:  151 MTDVARLLASTGAPLLTNVYPYFAYKDNPRDIQLNYATFRPGTTTVRDPNTGLTSQCLFDAMVDAVVAALERSGAPGVRVVVSESGWP---SASGFAATADNARAYNQGLIDHVG--GGTPKRPG-ALETYIFAMFNENFKTGELTE 291          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13J_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-O (Fragment) OS=Nicotiana tabacum GN=PR0 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.885e-22
Identity = 53/143 (37.06%), Postives = 84/143 (58.74%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I+QFL  +  P   N YP+F +  +     L++ LF              Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NLI H++  AGTP  PGK+++TY+FA++DE+ K G  +E
Sbjct:    7 IIQFLARNNLPLLANVYPYFGHIYNTADVPLSYALFTQQEANPAG-----YQNLFDALLDSMYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLIDHVKRGAGTPKKPGKTIETYLFAMFDENDKKGEITE 141          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.885e-22
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 3
Query:    6 MRGILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIF 401
            ++ I+ FL  +G+P   N YP+FAY +D +   LA+ LF    G  D G    Y N+FDA +D++++AL  +G  +++IVV+E+GWP  G     G S++NA  Y  NLI H  S  GTP  PG+S++TY+F
Sbjct:  107 IKPIINFLVSNGAPLLANVYPYFAYAND-QSIPLAYALFTQQ-GNNDVG----YQNLFDAMLDSIYAALENVGASNLQIVVSESGWPSEGG---AGASIDNAGTYYANLIRHASSGDGTPKRPGESIETYLF 229          
BLAST of CF503936 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.332e-22
Identity = 53/143 (37.06%), Postives = 86/143 (60.14%), Query Frame = 3
Query:   15 ILQFLKDHGSPFTINPYPFFAYQSDPRPETLAFCLFQPNAGRVDSGTGIKYMNMFDAQVDAVHSALNAMGFKDVEIVVAETGWPYRGDPNEVGPSVENAKAYNGNLIAHLRSMAGTPLMPGKSVDTYIFALYDEDLKPGPTSE 443
            I++FL  +  P   N YP+F +  +     L++ LF        + TG  Y N+FDA +D+++ A+   G  +VEI+V+E+GWP  G+      ++ENA+ Y  NL+ H++  AGTP  PG+ V+TY+FA++DE+ K G  +E
Sbjct:  194 IIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFNQQG---TNSTG--YQNLFDALLDSIYFAVEKAGGPNVEIIVSESGWPSEGNS---AATIENAQTYYRNLVNHVKGGAGTPKKPGRIVETYLFAMFDENEKNGEVTE 328          
The following BLAST results are available for this feature:
BLAST of CF503936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13K_TOBAC1.518e-2339.86Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
EA6_ARATH4.418e-2336.11Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E13C_HORVU7.536e-2339.04Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13B_VITVI3.740e-2239.16Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E13B_PRUPE3.740e-2237.96Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_HORVU3.740e-2238.36Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13A_HORVU3.740e-2239.46Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E13J_TOBAC4.885e-2237.06Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E13B_SOYBN4.885e-2241.67Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]
E13C_TOBAC8.332e-2237.06Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-424 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503936 ID=CF503936; Name=CF503936; organism=Citrus sinensis; type=EST; length=444bp
ACACTATGAGAGGGATTTTGCAGTTTCTTAAAGACCACGGCTCCCCTTTT
ACCATCAACCCGTACCCGTTTTTCGCTTATCAAAGTGACCCGAGACCCGA
GACTCTTGCCTTCTGTTTGTTTCAACCCAACGCGGGACGAGTTGACTCCG
GGACCGGGATCAAATACATGAACATGTTCGACGCCCAGGTTGATGCTGTA
CATTCAGCCTTGAATGCAATGGGGTTCAAGGATGTCGAGATTGTGGTTGC
AGAGACAGGGTGGCCTTACCGCGGAGACCCGAATGAGGTTGGACCTAGTG
TTGAGAATGCCAAGGCCTATAACGGGAACTTGATTGCTCACCTTAGATCA
ATGGCTGGAACTCCATTGATGCCTGGAAAATCTGTGGATACATATATTTT
TGCTCTCTATGATGAGGACTTGAAGCCTGGCCCTACCTCTGAAC
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