CF503937

Overview
NameCF503937
Unique NameCF503937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503937_ssr1 microsatellite CF503937_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10777 contig Csv1_Contig10777:1..393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_HUMAN (40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.546e-29
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_BOVIN (40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.546e-29
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A+ KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19B_SCHPO (40S ribosomal protein S19-B OS=Schizosaccharomyces pombe GN=rps19b PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.632e-29
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++
Sbjct:    5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVV 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_PIG (40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 6.049e-29
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKDV+  EFV+A +A LK+SGK+++P W D VK A  KELAPYD +W+Y RAAS AR +YLR G GVGS  +IYGG +RNG  P HF + S ++AR +L
Sbjct:    5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19A_SCHPO (40S ribosomal protein S19-A OS=Schizosaccharomyces pombe GN=rps19a PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.901e-29
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            +VKDV   +F+ AY+A LKRSGKM  P W DIVKT   KELAPYDPDWYYVRAA++AR IYLR+ +GVG   ++YGGS   G RP H    SG++ R ++
Sbjct:    5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVV 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_MYXGL (40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.348e-28
Identity = 55/100 (55.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKDV+  EFVKA +A  K+SGK++ P W D VK  + KELAP+D DWYY+R AS+AR +Y+R G+GVG+  +IYGG +RNG+RP H+ + S  +AR +L
Sbjct:    5 TVKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19A_DROME (40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 5.121e-28
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKD+  H   KA +  LK++GK+++P   DIVKTA+FKELAPYDPDW+YVR AS+ R +Y R   GVGS  +IYGG KRNG  P HFC+++   AR  L
Sbjct:    5 TVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKAL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_ICTPU (40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.688e-28
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TVKDV+  EFV+A +A LK+SGK+++P W DIVK A+ KELAP D +W+Y+RAAS  R +YLR G+GVGS  +IYGG KRNG  P HF   S  +AR +L
Sbjct:    7 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVL 106          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19_DICDI (40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.542e-27
Identity = 51/103 (49.51%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   85 TARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TA T+KDV P EF+  Y+  LK++G++++P W DI KTA ++EL P +PDW Y R A++ARK+Y+R G GV ++RR++GG++RNG RP HF   +G   R+ L
Sbjct:    4 TAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCL 106          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19S_ASCSU (40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.542e-27
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1
Query:   79 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            M    +VKDV  HE V+  +  LK+SGK+++P W+D+VK    KELAP D DWYYVR AS+AR++Y+R   GVG+ RR+YGG+KR G  P HF ++SG++ R  L
Sbjct:    1 MVKQPSVKDVDQHEIVRYIAGFLKKSGKVKVPEWSDLVKLGITKELAPVDSDWYYVRTASVARRLYIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKAL 105          
The following BLAST results are available for this feature:
BLAST of CF503937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS19_HUMAN3.546e-2958.0040S ribosomal protein S19 OS=Homo sapiens GN=RPS19... [more]
RS19_BOVIN3.546e-2958.0040S ribosomal protein S19 OS=Bos taurus GN=RPS19 P... [more]
RS19B_SCHPO4.632e-2958.0040S ribosomal protein S19-B OS=Schizosaccharomyces... [more]
RS19_PIG6.049e-2958.0040S ribosomal protein S19 (Fragment) OS=Sus scrofa... [more]
RS19A_SCHPO7.901e-2958.0040S ribosomal protein S19-A OS=Schizosaccharomyces... [more]
RS19_MYXGL1.348e-2855.0040S ribosomal protein S19 OS=Myxine glutinosa GN=r... [more]
RS19A_DROME5.121e-2856.0040S ribosomal protein S19a OS=Drosophila melanogas... [more]
RS19_ICTPU6.688e-2858.0040S ribosomal protein S19 OS=Ictalurus punctatus G... [more]
RS19_DICDI2.542e-2749.5140S ribosomal protein S19 OS=Dictyostelium discoid... [more]
RS19S_ASCSU2.542e-2751.4340S ribosomal protein S19S OS=Ascaris suum GN=RPS1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-425 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503937 ID=CF503937; Name=CF503937; organism=Citrus sinensis; type=EST; length=394bp
GAGAGAGAGAGAGAGCGCAATTCCACCACCTTCTTGCAAAAGCGAAGCTT
TGAGTCGCTCTCCTGCTCTGTTGTGACCATGGCTACAGCTAGGACTGTCA
AGGACGTGTCTCCTCATGAGTTCGTGAAGGCTTACTCTGCTCATCTCAAG
CGATCTGGCAAGATGGAACTTCCCCCATGGACTGACATAGTCAAGACTGC
TCAGTTCAAGGAGCTTGCTCCCTACGACCCTGACTGGTACTATGTCAGAG
CTGCCTCCATGGCAAGGAAAATCTACTTGAGGCAAGGGCTTGGTGTGGGT
TCTTTCAGGAGGATTTATGGTGGAAGTAAGAGGAATGGAAGCCGTCCACC
TCACTTCTGCAAAAGCAGTGGTGCTATTGCTCGCCACATTCTTC
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