CF503937

Overview
NameCF503937
Unique NameCF503937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503937_ssr1 microsatellite CF503937_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10777 contig Csv1_Contig10777:1..393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19E_ARCFU (30S ribosomal protein S19e OS=Archaeoglobus fulgidus GN=rps19e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 44/101 (43.56%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPP-WTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TV DV     +K  +  LK    M  PP W   VKT   KE +P   DW+Y+R AS+ R++Y+   +G+   R  YGG KR GS+PP F K SGAI R+ L
Sbjct:    3 TVYDVPADLLIKRVAERLK---DMVAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNAL 100          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19E_METJA (30S ribosomal protein S19e OS=Methanocaldococcus jannaschii GN=rps19e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TV DV   + ++  +  LK    + +P W D VKT   +E  P   DW+Y+R AS+ RKIY+   +GV   R  YGG K  G  P HF K SG I R  L
Sbjct:    3 TVYDVPADKLIQKTAEKLKEMN-IGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKAL 101          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19E_AERPE (30S ribosomal protein S19e OS=Aeropyrum pernix GN=rps19e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.179e-14
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  172 PPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            P W    KT   KE  P D DW+YVRAAS+ RK+Y   + +G+ +FR IYGG +  GS P HF K+ G++ R IL
Sbjct:   30 PAWAYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKIL 104          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19E_PYRHO (30S ribosomal protein S19e OS=Pyrococcus horikoshii GN=rps19e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.728e-13
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 393
            TV DV     V+  +  LK   +++ P W   VKT + KE  P   DW+Y R AS+ R++Y+   +G+   R  YGG K  G  P  F K+ G+I R  L
Sbjct:    3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKAL 102          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19E_THEVO (30S ribosomal protein S19e OS=Thermoplasma volcanium GN=rps19e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.145e-12
Identity = 38/99 (38.38%), Postives = 48/99 (48.48%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHI 390
            +VK V     +   S  LK   K++ P W   VKT   KE  P   DW YVRAASM RK+Y+   LG+      YGG    GS+  H    S +I R +
Sbjct:    3 SVKYVPSDMLINYVSGKLKEEKKIKEPNWVKFVKTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFL 101          
BLAST of CF503937 vs. ExPASy Swiss-Prot
Match: RS19E_THEAC (30S ribosomal protein S19e OS=Thermoplasma acidophilum GN=rps19e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.553e-11
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 1
Query:   94 TVKDVSPHEFVKAYSAHLKRSGKMELPPWTDIVKTAQFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHI 390
            +VK V     +   S  LK   K+  P W+  VKT   +E +P + DW YVRAA+M RK+Y+   LG+      YGG    GS+  H  + S +I R++
Sbjct:    3 SVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYL 101          
The following BLAST results are available for this feature:
BLAST of CF503937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RS19E_ARCFU2.232e-1543.5630S ribosomal protein S19e OS=Archaeoglobus fulgid... [more]
RS19E_METJA1.108e-1441.0030S ribosomal protein S19e OS=Methanocaldococcus j... [more]
RS19E_AERPE7.179e-1448.0030S ribosomal protein S19e OS=Aeropyrum pernix GN=... [more]
RS19E_PYRHO2.728e-1337.0030S ribosomal protein S19e OS=Pyrococcus horikoshi... [more]
RS19E_THEVO5.145e-1238.3830S ribosomal protein S19e OS=Thermoplasma volcani... [more]
RS19E_THEAC2.553e-1136.3630S ribosomal protein S19e OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-425 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503937 ID=CF503937; Name=CF503937; organism=Citrus sinensis; type=EST; length=394bp
GAGAGAGAGAGAGAGCGCAATTCCACCACCTTCTTGCAAAAGCGAAGCTT
TGAGTCGCTCTCCTGCTCTGTTGTGACCATGGCTACAGCTAGGACTGTCA
AGGACGTGTCTCCTCATGAGTTCGTGAAGGCTTACTCTGCTCATCTCAAG
CGATCTGGCAAGATGGAACTTCCCCCATGGACTGACATAGTCAAGACTGC
TCAGTTCAAGGAGCTTGCTCCCTACGACCCTGACTGGTACTATGTCAGAG
CTGCCTCCATGGCAAGGAAAATCTACTTGAGGCAAGGGCTTGGTGTGGGT
TCTTTCAGGAGGATTTATGGTGGAAGTAAGAGGAATGGAAGCCGTCCACC
TCACTTCTGCAAAAGCAGTGGTGCTATTGCTCGCCACATTCTTC
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