CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.007e-61
Identity = 109/189 (57.67%), Postives = 147/189 (77.78%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE +D+ +D++R+L DNC GLQGF VF++                   DYGKKSKL F+VYP+P +++SVVEPYNSVL+TH+ LEH+D + ++DNEAIYDIC+++L+I +P  TNLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVP+PRIHF L++ AP++S +KA HE  SVAE+T S FEP +
Sbjct:  111 KEQIDVVMDKVRRLVDNCNGLQGFFVFHSFGGGTGSGFGALILERLSTDYGKKSKLEFSVYPAPTLASSVVEPYNSVLTTHTTLEHSDCSFMVDNEAIYDICKKNLNIAQPGLTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLATLAPIVSVDKAGHESNSVAEMTYSCFEPGN 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 7.846e-61
Identity = 109/190 (57.37%), Postives = 148/190 (77.89%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            K+++D+ +DR+RK+ADNCT LQGF +F++V                 V++ KK KL +TVYPSPQ++TSVVEPYNSVLSTHSLLEH D++V+LDN+AIYDIC++ L IER  Y NLN ++SQ +S++T SLRF G+LNVD+ E+QTNLVPYPRIHFMLSS AP+IS ++ ++ + +VAE+T+S FE  +M
Sbjct:  110 KDMLDVTVDRLRKIADNCTSLQGFQIFHSVGGGTGSGFASLLVERLSVEFPKKCKLSYTVYPSPQLATSVVEPYNSVLSTHSLLEHNDISVVLDNQAIYDICKQRLKIERANYRNLNHVISQTVSAITCSLRFSGSLNVDMNEYQTNLVPYPRIHFMLSSLAPMISRQENYYHENNVAELTSSVFEADNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 7.846e-61
Identity = 110/189 (58.20%), Postives = 146/189 (77.25%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE+VD  +DR+R+L+DNC+ LQGFLVF++                   +YGKKSKL F VYPSP+VST+VVEPYN+VLSTHS +E++D   L+DNEA+YDICRR+LDI RP++ +LNRL++QV+SS+T+SLRFDGALNVD+ EFQTNLVP+PRIH+ L SYAPVIS+ ++ HE   V ++T    EP++
Sbjct:  114 KELVDTVVDRVRRLSDNCSSLQGFLVFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPSPRVSTAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSFEHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPFPRIHYPLISYAPVISSNRSSHESFKVQDLTLQCAEPNN 302          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.283e-60
Identity = 113/189 (59.79%), Postives = 145/189 (76.72%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE+VD  +DRIR++ADNC  LQGFL+F++                   +YGKKSKL F VYP+P+VST+VVEPYN+VLSTHS +E++D   L+DNEA+YDICRR+LDI RP+Y +LNRL++QV+SS+T+SLRFDGALNVD+ EFQTNLVPYPRIH+ L SYAPVIS  K+ HE   V ++T   FEP++
Sbjct:  113 KEMVDNVIDRIRRVADNCHSLQGFLIFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPAPRVSTAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSYDHLNRLIAQVVSSITSSLRFDGALNVDLNEFQTNLVPYPRIHYPLISYAPVISGFKSAHESFKV-QLTFQCFEPNN 300          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.981e-60
Identity = 115/190 (60.53%), Postives = 145/190 (76.32%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA-SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KE++D CLD++R++ADNC+GLQGFLVF++                  VDYGKK+KL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+DV  ++DNEAIYDICRR+L IERP+Y N NRL++Q  S +TA  L FD ALNVD+ EFQTNLVPYPRIHF L+SY+PV+SA KA HE  SV E+T   FEP++
Sbjct:  112 KEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITAIMLLFDCALNVDLNEFQTNLVPYPRIHFPLASYSPVVSAGKASHESNSVMEVTIVCFEPNN 301          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.894e-60
Identity = 107/189 (56.61%), Postives = 152/189 (80.42%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI++  +++IR++ADNC GLQGFL++++                   ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+ L+++D + L+DNEAIYD+CR +L I+RP YT++NR+++QV+SS+TASLRF G+LNVD+TEFQTNLVPYPRIHF L +Y+P++S EKA HE+LSV EITN+ FEP S
Sbjct:   87 KEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLVDNEAIYDMCR-NLGIQRPYYTDINRIIAQVVSSITASLRFPGSLNVDLTEFQTNLVPYPRIHFPLVAYSPMLSKEKAAHEKLSVQEITNACFEPQS 274          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 1.933e-59
Identity = 105/188 (55.85%), Postives = 144/188 (76.60%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            E++DL L+R RKLA+ C GLQGFL+F +                   +Y +K+KL F+VYP+P++ST+VVEPYNSVL+THS  EHTD   ++DNEA+YDIC R L +E P++ ++NRLV QV+SS+TASLRF+G LNVD+ EFQTNLVPYPRIHF ++++AP++SA+KA+HEQ SV++IT + FE S+
Sbjct:  120 EVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVYPAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVVQVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDITTACFESSN 307          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.933e-59
Identity = 107/186 (57.53%), Postives = 145/186 (77.96%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFE 560
            KE++D  +D++R+LADNC+G QG  VF++                   DYGKK+KL F VYP+PQ+S+SVVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC+++L + +P +TNLNRL++QV+SS+TASLRFDG+LNVD+ EFQTNLVP+PRIHF L+SYAP++SA +  HEQ SV E+T S FE
Sbjct:  110 KELIDPVMDKLRRLADNCSGRQGLFVFHSFGGGTGSGFGALLLERLSTDYGKKAKLEFCVYPAPQLSSSVVEPYNSLLTTHTTLEHSDCSFMVDNEAIYDICKKNLGVAQPGFTNLNRLIAQVVSSITASLRFDGSLNVDLNEFQTNLVPFPRIHFPLASYAPLLSAPRRQHEQNSVEEMTFSCFE 295          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 105/189 (55.56%), Postives = 152/189 (80.42%), Query Frame = 3
Query:    3 KEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            KEI++  +++IR++AD+C GLQGFL++++                   ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+ L+++D + L+DNEAIYD+CR +L I+RP YT++NR+++QV+SS+TASLRF G+LNVD+TEFQTNLVPYPRIHF L +Y+P++S EKA HE+LSV EITN+ FEP +
Sbjct:  109 KEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLVDNEAIYDMCR-NLGIQRPYYTDINRVIAQVVSSITASLRFPGSLNVDLTEFQTNLVPYPRIHFPLVAYSPMLSKEKAAHEKLSVQEITNACFEPQN 296          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 7.344e-59
Identity = 106/188 (56.38%), Postives = 147/188 (78.19%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSS 569
            E+++L L+RIRKLA+ C+GLQGFL++ +                  V+Y KK KL F+VYPSP++ST+VVEPYN++L+THS +E++D A ++DNEA+YDIC+  L I RP+Y ++NRL++QV SS+TASLRF+G LNVD+ EFQTNLVPYPRIHF +++ AP+ISAEKA+ EQLSV+++T S FE S+
Sbjct:  120 EVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIGRPSYASINRLIAQVSSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTASCFEVSN 307          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBAA_SCHCO6.007e-6157.67Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA6_NAEGR7.846e-6157.37Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA2_EMENI7.846e-6158.20Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_GLOLA2.283e-6059.79Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBA_AJECA2.981e-6060.53Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_ENCHE3.894e-6056.61Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBAL3_HUMAN1.933e-5955.85Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBAB_SCHCO1.933e-5957.53Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA_ENCCU3.296e-5955.56Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBAL3_MOUSE7.344e-5956.38Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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