CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_HOMAM (Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 74/189 (39.15%), Postives = 114/189 (60.32%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK ++ C  LQGF + +++                  ++  +  + F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L ++ PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  L+V E+T   F+  +M
Sbjct:  116 ELVDSVLDVVRKKSEKCDCLQGFQLTHSLGGVTGSGMGTLLVSKILEEFPDRIMVTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLQNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNM 304
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 112/189 (59.26%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK ++ C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKESEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_DROHY (Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 112/189 (59.26%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK ++ C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKESEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 112/189 (59.26%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK ++ C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKESEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2A_RAT (Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK +++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2A_MOUSE (Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK +++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2A_MACFA (Tubulin beta-2A chain OS=Macaca fascicularis GN=TUBB2A PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK +++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB2A_HUMAN (Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK +++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK A++C  LQGF + +++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNM 299
[Close]
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.299e-36
Identity = 76/189 (40.21%), Postives = 113/189 (59.79%), Query Frame = 3 
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +RK A++C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  P+Y +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDGKNM 299
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB2_HOMAM2.299e-3639.15Tubulin beta-2 chain OS=Homarus americanus PE=2 SV... [more]
TBB2_DROME2.299e-3640.21Tubulin beta-2 chain OS=Drosophila melanogaster GN... [more]
TBB2_DROHY2.299e-3640.21Tubulin beta-2 chain OS=Drosophila hydei GN=betaTu... [more]
TBB2_DROER2.299e-3640.21Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]
TBB2A_RAT2.299e-3640.21Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2A_MOUSE2.299e-3640.21Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE... [more]
TBB2A_MACFA2.299e-3640.21Tubulin beta-2A chain OS=Macaca fascicularis GN=TU... [more]
TBB2A_HUMAN2.299e-3640.21Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE... [more]
TBB1_GLOMM2.299e-3640.21Tubulin beta-1 chain OS=Glossina morsitans morsita... [more]
TBB1_GADMO2.299e-3640.21Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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