CF504033

Overview
NameCF504033
Unique NameCF504033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 72/189 (38.10%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PSP+VS +VVEPYN+ LS H L+E++D    +DNEA+Y+IC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   ++P +M
Sbjct:  111 ELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYEICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMYDPKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 72/189 (38.10%), Postives = 113/189 (59.79%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+++  +D +RK A++C  LQGF + +++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H L+E+ D    +DNEA+YDIC ++L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+VAE+T   F+  +M
Sbjct:  111 ELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 72/189 (38.10%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+++  LD +RK  + C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E TD    +DNEA+YDIC R+L +  P Y++LN LVS  +S +T SLRF G LN D+ +   N+VP+PR+HF +  +AP+ S     ++  ++ E+T   F+  +M
Sbjct:  111 ELIEEVLDVVRKECEACDCLQGFQLCHSLGGGTGSGMGTLLIAKIREEYPDRIMTSFSVVPSPKVSDTVVEPYNATLSVHQLVESTDETFCIDNEALYDICFRTLKLPNPNYSDLNHLVSLTMSGVTTSLRFPGQLNSDLRKLAVNMVPFPRLHFFVPGFAPLASRTSQSYQSCTILELTRQMFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.946e-35
Identity = 76/189 (40.21%), Postives = 112/189 (59.26%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +R+ A+ C  LQGF + +++                  ++  +    F+V PS +VS  VVEPYN+ LS H L+E++D    +DNEA+YDICRR+L    P+Y +LN LVS+V+S LT   RF G LN D+ +   NLVP+PR+HF    +AP+ S+  A    L +AE+T   F+P ++
Sbjct:  111 ELVDQVLDVVRREAEACDSLQGFQITHSLGGGTGSGMGTLLIAKVREEFPDRMMATFSVLPSAKVSEVVVEPYNATLSIHQLVENSDETFCIDNEALYDICRRTLKQAHPSYGHLNHLVSRVMSGLTTGFRFPGQLNADLRKLAVNLVPFPRLHFFTVGFAPLTSS--ASFSNLGIAELTQQMFDPKNV 297          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 72/189 (38.10%), Postives = 112/189 (59.26%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+ +  +D +RK A++C  LQGF + +++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H L+E+ D    +DNEA+YDIC ++L +  PTY +LN LVS  +S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S     +  L+VAE+T   F+  +M
Sbjct:   39 ELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMVTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVHQLIENADETFCIDNEALYDICSKTLKLPTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVAELTQQMFDAKNM 227          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +R+ A+ C  LQGF V +++                  ++  +    ++V PSP+VS +VVEPYN  LS H L+E+ D    +DNEA+Y+IC  +L    P Y +LN+LVS V+S +T+SLRF G LN D+ +   NLVP+PR+HF +  YAP+ +     +   +VA++T   F+P +M
Sbjct:  111 ELVDSVLDVVRREAEGCDCLQGFQVTHSLGGGTGSGMGTLLVSKIREEFPDRMMCTYSVMPSPKVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLNKLVSGVMSGITSSLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGYAPLSADGVTAYRAKTVADLTKQMFDPKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E+VD  LD +R+ A+ C  LQGF V +++                  ++  +    ++V PSP+VS +VVEPYN  LS H L+E+ D    +DNEA+Y+IC  +L    P Y +LN+LVS V+S +T+SLRF G LN D+ +   NLVP+PR+HF +  YAP+ +     +   +VA++T   F+P +M
Sbjct:  111 ELVDSVLDVVRREAEGCDCLQGFQVTHSLGGGTGSGMGTLLVSKIREEFPDRMMCTYSVMPSPKVSDTVVEPYNCTLSVHQLVENADAVFCIDNEALYNICYNTLKKPEPAYPDLNKLVSGVMSGITSSLRFPGQLNSDLRKLAVNLVPFPRLHFFMIGYAPLSADGVTAYRAKTVADLTKQMFDPKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.542e-35
Identity = 76/191 (39.79%), Postives = 118/191 (61.78%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV-TEFQTNLVPYPRIHFMLSSYAPVIS-AEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD  RK A++C  LQGF + +++                  +Y  +  + F+V PSP+VS +VVEPYN+ LS H L+E++D ++ +DNEA+YDIC R+L +  PT+ +LN LV+ V+S +T  LRF G LN D+      NLVP+PR+HF +  +AP+ S   + + + LSVA++T   F+  +M
Sbjct:  111 ELIDSVLDVCRKEAESCDCLQGFQLSHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVIPSPRVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVAAVMSGVTCCLRFPGQLNSDLRNRLAVNLVPFPRLHFFMMGFAPLTSRGSQEYRQGLSVADVTQQMFDAKNM 301          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 72/189 (38.10%), Postives = 110/189 (58.20%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A++C  +QGF + +++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+ D    LDNEA+YDIC R+L +  PTY +LN L++  +   T  LRF G LN D+ +   N+VP+PR+HF +  YAP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDSVLDVVRKEAESCDCMQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLIAAAVCGTTCCLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGYAPLTSRGSQQYRALTVPELTQQCFDAKNM 299          
BLAST of CF504033 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.319e-35
Identity = 74/189 (39.15%), Postives = 111/189 (58.73%), Query Frame = 3
Query:    6 EIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSM 572
            E++D  LD +RK A++C  LQGF + +++                  +Y  +    ++V PSP+VS +VVEPYN+ LS H L+E+ D  + LDNEA+YDIC R+L +  PTY +LN LV   +S +T  LRF G LN  +  F  NL+P+PR+HF +  +AP+ S     +  L+V E+T   F+  +M
Sbjct:  111 ELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLVCAAMSGITTCLRFPGQLNSVLKLFAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNM 299          
The following BLAST results are available for this feature:
BLAST of CF504033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB_UNCNE1.946e-3538.10Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB8_HUMAN1.946e-3538.10Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]
TBB3_ECHMU1.946e-3538.10Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB1_COLGR1.946e-3540.21Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
YI016_HUMAN2.542e-3538.10Putative tubulin beta chain-like protein ENSP00000... [more]
TBB_PORYE2.542e-3539.15Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB_PORPU2.542e-3539.15Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB_LEIME2.542e-3539.79Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB_THAWE3.319e-3538.10Tubulin beta chain OS=Thalassiosira weissflogii PE... [more]
TBB_PHYCI3.319e-3539.15Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504033 ID=CF504033; Name=CF504033; organism=Citrus sinensis; type=EST; length=574bp
GGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAACTTGCTGAT
AATTGCACTGGGCTACAAGGGTTCCTGGTTTTCAATGCTGTTGGAGGTGG
TACTGGCTCTGGACTTGGGTCACTTCTCTTGGAGCGTCTCTCTGTTGACT
ATGGAAAGAAATCAAAGCTTGGTTTCACTGTGTATCCTTCACCTCAGGTT
TCCACATCAGTTGTGGAACCTTACAACAGTGTTCTTTCAACACATTCCCT
CCTTGAGCACACCGATGTTGCTGTGCTTCTTGATAATGAAGCCATCTATG
ATATCTGCAGGCGCTCTCTTGACATTGAGCGCCCCACTTACACCAATCTC
AACCGACTTGTCTCTCAGGTGATCTCATCCCTCACTGCCTCTTTGAGGTT
TGATGGAGCTCTGAATGTGGATGTGACTGAGTTCCAGACCAATTTGGTTC
CCTATCCAAGGATCCATTTCATGCTCTCCTCTTATGCCCCAGTTATCTCT
GCAGAGAAGGCATTCCATGAGCAACTTTCAGTTGCTGAGATCACCAACAG
TGCTTTTGAGCCATCATCCATGAT
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