CF504041

Overview
NameCF504041
Unique NameCF504041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:43..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METKA (30S ribosomal protein S17P OS=Methanopyrus kandleri GN=rps17p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  147 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            R  K IGLG K PR   +    D  CPF G + +RG IL G   S +M++T+IV R Y  + +KY+R+E+R S IPAH  PC   +EGD V I +CR LSKT  F V++V+
Sbjct:    6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREYYRYDRKYERWERRRSRIPAHNPPCIDAQEGDKVRIAECRPLSKTKSFVVIEVL 112          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METBF (30S ribosomal protein S17P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps17p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.500e-22
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            + IGL    P E    +Y    CPF GT+S+RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S + AH  PC   K GD V I +CR +SKT  + V+K
Sbjct:    3 RDIGLNIPAPSEECNDSY----CPFHGTLSVRGQILVGTVVSSKMDNTVVIERQYMKLVPKYQRYEKRRSKVHAHNPPCISAKVGDIVTIAECRRISKTKSYVVVK 104          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_UNCMA (30S ribosomal protein S17P OS=Uncultured methanogenic archaeon RC-I GN=rps17p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21
Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            K IGL  K P+        D +CPF G++++RG+I  GT  SAKM+++++V R YL    KY RYEKR S + AH  PC   KEGD V+I +CR LSKT  F V++V
Sbjct:    3 KDIGLNVKAPKTECN----DPQCPFHGSLAVRGQIFEGTVVSAKMSKSVVVSREYLKRDLKYDRYEKRRSKLHAHNPPCINAKEGDKVVIAECRPLSKTKTFVVVEV 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METLZ (30S ribosomal protein S17P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps17p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            K+IGL    P +  +    D  CPF G++ +RG+++ G   S +M  T++V RN+LH V+KY RYEKR S I AH++PC   K GD V I +CR L+KT  + V++VI
Sbjct:    3 KNIGLNVAVPEKDCD----DVNCPFHGSLPVRGQVITGKVVSERMQGTVVVERNFLHKVQKYDRYEKRSSKIHAHMAPCLNAKIGDEVKIAECRPLNKTTSYVVVEVI 106          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METMJ (30S ribosomal protein S17P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            ++IGL    P    E    D  CPF GT+ +RG+++ G   S +MN T++V R +LH+VKKY+RYEKR S   AH +PC     GD V I +CR LSKT  F V++V+
Sbjct:    3 RNIGLDVPIPETECE----DVNCPFHGTLPVRGQVITGKVVSDRMNGTVVVEREFLHYVKKYKRYEKRRSRYHAHSTPCINAGVGDVVRIAECRPLSKTTNFVVVEVM 106          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METHJ (30S ribosomal protein S17P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps17p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            + IGL    P +       D  CPF GT+ +RG+++ G   S KM  +++V+R+YLHFV+KYQRYEKR S I AH  PC   + GD V I +CR LSKT  + V++V
Sbjct:    3 RDIGLNVPVPEKDCS----DVNCPFHGTLPVRGQVITGKVVSDKMTGSVVVQRDYLHFVRKYQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLSKTKTYVVVEV 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METMA (30S ribosomal protein S17P OS=Methanosarcina mazei GN=rps17p PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.226e-20
Identity = 50/106 (47.17%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            + IGL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CR +SKT  F V+K
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIVECRPISKTKSFVVVK 104          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METAC (30S ribosomal protein S17P OS=Methanosarcina acetivorans GN=rps17p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.226e-20
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            + IGL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CR +SKT  + V+K
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPISKTKSYVVVK 104          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METPE (30S ribosomal protein S17P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps17p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            ++IGL  + P E  +    D  CPF G +S+RG+++ G   S +M  TI+V R+YLH+V+KY+RYEKR S + AH  PC +VK GD V I +CR +SK+  F V++V
Sbjct:    3 RNIGLNVQPPVEECQ----DVNCPFHGNLSVRGQVITGKVVSDRMLGTIVVGRDYLHYVRKYKRYEKRSSKLHAHNPPCLQVKVGDIVKIAECRPISKSTTFVVVEV 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METB6 (30S ribosomal protein S17P OS=Methanoregula boonei (strain 6A8) GN=rps17p PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.658e-20
Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            ++IGL  + P++  +    D  CPF GT+ +RG+++ G   S KM  T++V R+YLH+V+KY RYEKR S + AH  PC + K GD V I +CR LSK+  + V++V
Sbjct:    3 QNIGLNVQPPKQECK----DVNCPFHGTLPVRGQVITGKVVSDKMMGTVVVARDYLHYVRKYNRYEKRISKLHAHNPPCIQAKVGDLVKIAECRPLSKSTTYVVVEV 105          
The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_METKA4.977e-2246.8530S ribosomal protein S17P OS=Methanopyrus kandler... [more]
RS17_METBF6.500e-2247.1730S ribosomal protein S17P OS=Methanosarcina barke... [more]
RS17_UNCMA1.891e-2147.6630S ribosomal protein S17P OS=Uncultured methanoge... [more]
RS17_METLZ7.186e-2144.4430S ribosomal protein S17P OS=Methanocorpusculum l... [more]
RS17_METMJ9.385e-2145.3730S ribosomal protein S17P OS=Methanoculleus maris... [more]
RS17_METHJ9.385e-2145.7930S ribosomal protein S17P OS=Methanospirillum hun... [more]
RS17_METMA1.226e-2047.1730S ribosomal protein S17P OS=Methanosarcina mazei... [more]
RS17_METAC1.226e-2046.2330S ribosomal protein S17P OS=Methanosarcina aceti... [more]
RS17_METPE1.601e-2045.7930S ribosomal protein S17P OS=Methanosphaerula pal... [more]
RS17_METB64.658e-2043.9330S ribosomal protein S17P OS=Methanoregula boonei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bp
GCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAAATCCAGCCATG
GCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAG
CTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGAT
TCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAA
GGGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAG
GGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCA
TCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTAT
GAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGT
GAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCTTTTGTCAAAGA
CGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCT
back to top