CF504041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METKA (30S ribosomal protein S17P OS=Methanopyrus kandleri GN=rps17p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.977e-22 Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 3 Query: 147 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 R K IGLG K PR + D CPF G + +RG IL G S +M++T+IV R Y + +KY+R+E+R S IPAH PC +EGD V I +CR LSKT F V++V+ Sbjct: 6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREYYRYDRKYERWERRRSRIPAHNPPCIDAQEGDKVRIAECRPLSKTKSFVVIEVL 112
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METBF (30S ribosomal protein S17P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps17p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 6.500e-22 Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 + IGL P E +Y CPF GT+S+RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S + AH PC K GD V I +CR +SKT + V+K Sbjct: 3 RDIGLNIPAPSEECNDSY----CPFHGTLSVRGQILVGTVVSSKMDNTVVIERQYMKLVPKYQRYEKRRSKVHAHNPPCISAKVGDIVTIAECRRISKTKSYVVVK 104
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_UNCMA (30S ribosomal protein S17P OS=Uncultured methanogenic archaeon RC-I GN=rps17p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.891e-21 Identity = 51/107 (47.66%), Postives = 68/107 (63.55%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 K IGL K P+ D +CPF G++++RG+I GT SAKM+++++V R YL KY RYEKR S + AH PC KEGD V+I +CR LSKT F V++V Sbjct: 3 KDIGLNVKAPKTECN----DPQCPFHGSLAVRGQIFEGTVVSAKMSKSVVVSREYLKRDLKYDRYEKRRSKLHAHNPPCINAKEGDKVVIAECRPLSKTKTFVVVEV 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METLZ (30S ribosomal protein S17P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps17p PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21 Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 K+IGL P + + D CPF G++ +RG+++ G S +M T++V RN+LH V+KY RYEKR S I AH++PC K GD V I +CR L+KT + V++VI Sbjct: 3 KNIGLNVAVPEKDCD----DVNCPFHGSLPVRGQVITGKVVSERMQGTVVVERNFLHKVQKYDRYEKRSSKIHAHMAPCLNAKIGDEVKIAECRPLNKTTSYVVVEVI 106
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METMJ (30S ribosomal protein S17P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps17p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21 Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 ++IGL P E D CPF GT+ +RG+++ G S +MN T++V R +LH+VKKY+RYEKR S AH +PC GD V I +CR LSKT F V++V+ Sbjct: 3 RNIGLDVPIPETECE----DVNCPFHGTLPVRGQVITGKVVSDRMNGTVVVEREFLHYVKKYKRYEKRRSRYHAHSTPCINAGVGDVVRIAECRPLSKTTNFVVVEVM 106
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METHJ (30S ribosomal protein S17P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps17p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 9.385e-21 Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 + IGL P + D CPF GT+ +RG+++ G S KM +++V+R+YLHFV+KYQRYEKR S I AH PC + GD V I +CR LSKT + V++V Sbjct: 3 RDIGLNVPVPEKDCS----DVNCPFHGTLPVRGQVITGKVVSDKMTGSVVVQRDYLHFVRKYQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLSKTKTYVVVEV 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METMA (30S ribosomal protein S17P OS=Methanosarcina mazei GN=rps17p PE=3 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 1.226e-20 Identity = 50/106 (47.17%), Postives = 64/106 (60.38%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 + IGL P E + Y CPF GT+ +RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S I AH C K GD V I +CR +SKT F V+K Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIVECRPISKTKSFVVVK 104
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METAC (30S ribosomal protein S17P OS=Methanosarcina acetivorans GN=rps17p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.226e-20 Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 + IGL P E + Y CPF GT+ +RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S I AH C K GD V I +CR +SKT + V+K Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPISKTKSYVVVK 104
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METPE (30S ribosomal protein S17P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps17p PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20 Identity = 49/107 (45.79%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 ++IGL + P E + D CPF G +S+RG+++ G S +M TI+V R+YLH+V+KY+RYEKR S + AH PC +VK GD V I +CR +SK+ F V++V Sbjct: 3 RNIGLNVQPPVEECQ----DVNCPFHGNLSVRGQVITGKVVSDRMLGTIVVGRDYLHYVRKYKRYEKRSSKLHAHNPPCLQVKVGDIVKIAECRPISKSTTFVVVEV 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METB6 (30S ribosomal protein S17P OS=Methanoregula boonei (strain 6A8) GN=rps17p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.658e-20 Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 ++IGL + P++ + D CPF GT+ +RG+++ G S KM T++V R+YLH+V+KY RYEKR S + AH PC + K GD V I +CR LSK+ + V++V Sbjct: 3 QNIGLNVQPPKQECK----DVNCPFHGTLPVRGQVITGKVVSDKMMGTVVVARDYLHYVRKYNRYEKRISKLHAHNPPCIQAKVGDLVKIAECRPLSKSTTYVVVEV 105 The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bpback to top |