CF504041

Overview
NameCF504041
Unique NameCF504041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:43..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALSA (30S ribosomal protein S17P OS=Halobacterium salinarium GN=rps17p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.498e-18
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488
            +IGL    P    EGT  D+ CPF G +S+RG++L G   S  M +T++V R Y  FV KY RY KR S +PAH   CF +  GD V I + R LSKT    V+++   G
Sbjct:    2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGG 107          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALS3 (30S ribosomal protein S17P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.498e-18
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488
            +IGL    P    EGT  D+ CPF G +S+RG++L G   S  M +T++V R Y  FV KY RY KR S +PAH   CF +  GD V I + R LSKT    V+++   G
Sbjct:    2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGG 107          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METST (30S ribosomal protein S17P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps17p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  162 IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            +G+  K P +       D  CPF G +S+RG+++ GT  S K +RTI V R++  ++ K++RYEKR+S I AH   C  VK GD V I +CR LSKT  F +++V
Sbjct:    2 VGINVKQPEKECH----DPNCPFHGELSVRGQVIEGTVTSDKADRTITVERSFYKYINKFERYEKRNSKIKAHKPDCLDVKVGDSVKIAECRQLSKTKHFVLVEV 102          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRHO (30S ribosomal protein S17P OS=Pyrococcus horikoshii GN=rps17p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y H++KKY+RYE R S I AH  PC   K GD V+I + R LSKT  F V+ V+
Sbjct:    6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVISDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRAB (30S ribosomal protein S17P OS=Pyrococcus abyssi GN=rps17p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18
Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y H++KKY+RYE R S I AH  PC   K GD V+I + R LSKT  F V+ V+
Sbjct:    6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METBU (30S ribosomal protein S17P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps17p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18
Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            K IGL    P +  +    D  CPF G + +RG+I  GT  SAKM+RT+++++     + KYQRYEKR S I AH  PC   K GD V I +CR LSKT  + V+K
Sbjct:    3 KDIGLDIPEPTKECD----DINCPFHGELPVRGQIHVGTVVSAKMDRTVVIQQRREKLINKYQRYEKRQSKIHAHNPPCIDAKVGDIVTIAECRPLSKTKSYVVVK 104          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PICTO (30S ribosomal protein S17P OS=Picrophilus torridus GN=rps17p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.436e-18
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            ++IG+  K P    E T  D KCPF G + I G+I+ GT  S KMN +I+++R     +KKY+RYE + S   AH+  C  V+ GD V I +CR L+KT+ F V++ +
Sbjct:    2 ENIGIDVKKP----ERTCNDPKCPFHGNLRIHGQIIVGTVVSTKMNGSIVLKRESRRLIKKYERYETKISKFHAHLPGCIDVRPGDRVKIAECRKLAKTISFVVVEKV 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_SULSO (30S ribosomal protein S17P OS=Sulfolobus solfataricus GN=rps17p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVL 470
            D+ CP+ G++ +RG  L G     +  +  ++ R YL++  KY+RYE+R S I AH+ PC  V+EGD VIIG+CR LSK++ F VL
Sbjct:   25 DEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVL 110          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METTH (30S ribosomal protein S17P OS=Methanobacterium thermoautotrophicum GN=rps17p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            D  CPF G + +RG+IL GT  S K  RT+ V R++  F++KY+RYEKR S I AH   C  V+ GD V I +CR LSKT  F V++V
Sbjct:   15 DPNCPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRKYERYEKRKSKIKAHKPDCIDVRVGDTVKIAECRPLSKTKNFVVVEV 102          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_AERPE (30S ribosomal protein S17P OS=Aeropyrum pernix GN=rps17p PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            D  CP+ GT+ +RG +L G    A+  R ++V+  YL++ KKY RYE+R   I AH+  C  VKEGD V+IG+   +SKTV+F VL V
Sbjct:   24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYLYYDKKYNRYERRSKKIHAHLPDCISVKEGDVVVIGETMPISKTVKFTVLGV 111          
The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_HALSA1.498e-1843.6430S ribosomal protein S17P OS=Halobacterium salina... [more]
RS17_HALS31.498e-1843.6430S ribosomal protein S17P OS=Halobacterium salina... [more]
RS17_METST1.957e-1842.8630S ribosomal protein S17P OS=Methanosphaera stadt... [more]
RS17_PYRHO2.556e-1843.5230S ribosomal protein S17P OS=Pyrococcus horikoshi... [more]
RS17_PYRAB2.556e-1843.5230S ribosomal protein S17P OS=Pyrococcus abyssi GN... [more]
RS17_METBU2.556e-1845.2830S ribosomal protein S17P OS=Methanococcoides bur... [more]
RS17_PICTO7.436e-1841.6730S ribosomal protein S17P OS=Picrophilus torridus... [more]
RS17_SULSO9.712e-1845.3530S ribosomal protein S17P OS=Sulfolobus solfatari... [more]
RS17_METTH9.712e-1850.0030S ribosomal protein S17P OS=Methanobacterium the... [more]
RS17_AERPE2.164e-1746.5930S ribosomal protein S17P OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bp
GCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAAATCCAGCCATG
GCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAG
CTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGAT
TCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAA
GGGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAG
GGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCA
TCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTAT
GAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGT
GAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCTTTTGTCAAAGA
CGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCT
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