CF504041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALSA (30S ribosomal protein S17P OS=Halobacterium salinarium GN=rps17p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.498e-18 Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488 +IGL P EGT D+ CPF G +S+RG++L G S M +T++V R Y FV KY RY KR S +PAH CF + GD V I + R LSKT V+++ G Sbjct: 2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGG 107
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALS3 (30S ribosomal protein S17P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps17p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.498e-18 Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488 +IGL P EGT D+ CPF G +S+RG++L G S M +T++V R Y FV KY RY KR S +PAH CF + GD V I + R LSKT V+++ G Sbjct: 2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLSKTKSHVVVEITDGG 107
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METST (30S ribosomal protein S17P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps17p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18 Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 3 Query: 162 IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 +G+ K P + D CPF G +S+RG+++ GT S K +RTI V R++ ++ K++RYEKR+S I AH C VK GD V I +CR LSKT F +++V Sbjct: 2 VGINVKQPEKECH----DPNCPFHGELSVRGQVIEGTVTSDKADRTITVERSFYKYINKFERYEKRNSKIKAHKPDCLDVKVGDSVKIAECRQLSKTKHFVLVEV 102
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRHO (30S ribosomal protein S17P OS=Pyrococcus horikoshii GN=rps17p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18 Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y H++KKY+RYE R S I AH PC K GD V+I + R LSKT F V+ V+ Sbjct: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVISDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRAB (30S ribosomal protein S17P OS=Pyrococcus abyssi GN=rps17p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18 Identity = 47/108 (43.52%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y H++KKY+RYE R S I AH PC K GD V+I + R LSKT F V+ V+ Sbjct: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLSKTKHFVVVAVL 109
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METBU (30S ribosomal protein S17P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps17p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18 Identity = 48/106 (45.28%), Postives = 63/106 (59.43%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 K IGL P + + D CPF G + +RG+I GT SAKM+RT+++++ + KYQRYEKR S I AH PC K GD V I +CR LSKT + V+K Sbjct: 3 KDIGLDIPEPTKECD----DINCPFHGELPVRGQIHVGTVVSAKMDRTVVIQQRREKLINKYQRYEKRQSKIHAHNPPCIDAKVGDIVTIAECRPLSKTKSYVVVK 104
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PICTO (30S ribosomal protein S17P OS=Picrophilus torridus GN=rps17p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 7.436e-18 Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 ++IG+ K P E T D KCPF G + I G+I+ GT S KMN +I+++R +KKY+RYE + S AH+ C V+ GD V I +CR L+KT+ F V++ + Sbjct: 2 ENIGIDVKKP----ERTCNDPKCPFHGNLRIHGQIIVGTVVSTKMNGSIVLKRESRRLIKKYERYETKISKFHAHLPGCIDVRPGDRVKIAECRKLAKTISFVVVEKV 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_SULSO (30S ribosomal protein S17P OS=Sulfolobus solfataricus GN=rps17p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18 Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 3 Query: 213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVL 470 D+ CP+ G++ +RG L G + + ++ R YL++ KY+RYE+R S I AH+ PC V+EGD VIIG+CR LSK++ F VL Sbjct: 25 DEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLSKSISFVVL 110
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METTH (30S ribosomal protein S17P OS=Methanobacterium thermoautotrophicum GN=rps17p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18 Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 3 Query: 213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 D CPF G + +RG+IL GT S K RT+ V R++ F++KY+RYEKR S I AH C V+ GD V I +CR LSKT F V++V Sbjct: 15 DPNCPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRKYERYEKRKSKIKAHKPDCIDVRVGDTVKIAECRPLSKTKNFVVVEV 102
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_AERPE (30S ribosomal protein S17P OS=Aeropyrum pernix GN=rps17p PE=3 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17 Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 3 Query: 213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 D CP+ GT+ +RG +L G A+ R ++V+ YL++ KKY RYE+R I AH+ C VKEGD V+IG+ +SKTV+F VL V Sbjct: 24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYLYYDKKYNRYERRSKKIHAHLPDCISVKEGDVVVIGETMPISKTVKFTVLGV 111 The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bpback to top |