CF504041

Overview
NameCF504041
Unique NameCF504041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:43..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_SULAC (30S ribosomal protein S17P OS=Sulfolobus acidocaldarius GN=rps17p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17
Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  156 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            K++G+ G   P +  +  Y    CP+ G++ +RG +L G    A+ NRT  V R Y+ +  KY+RYE+R S I  HI  C  VKEGD+VIIG+ R ++K++ F +L V
Sbjct:    9 KNVGIEGVSAPSKTCDDEY----CPYHGSLKVRGIVLEGKLIRARANRTGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIAKSISFVILGV 112          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_SULTO (30S ribosomal protein S17P OS=Sulfolobus tokodaii GN=rps17p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  156 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVL 470
            K+IG+ G   P +  +    D  CPF G + +RG IL G     +  +T +V R+YL +  KY+RYE+R S I  HI PC  VKEGD+VII +CR ++K+V F V+
Sbjct:   12 KNIGIEGVNPPSKTCD----DINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVI 113          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METVA (30S ribosomal protein S17P OS=Methanococcus vannielii GN=rps17p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            +IG+  K P    E    D  CPF GT+S+RG+I  G     K + TI+++R    ++ KY+RYEKR +++ AH  PC   K GD V + +CR +SKT  F V++
Sbjct:    3 NIGIDVKAPENVCE----DVNCPFHGTLSVRGQIFEGVVSGDKGHNTIVIKREVTGYISKYERYEKRTTSLVAHNPPCINAKTGDVVKVMECRPVSKTKSFVVIE 103          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRFU (30S ribosomal protein S17P OS=Pyrococcus furiosus GN=rps17p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16
Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y  ++ KY+RYE R S I AH  PC   K GD V+I + R LSKT  F V+ V+
Sbjct:    3 RDIGLRVQPPAEKCD----DPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVL 106          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METMP (30S ribosomal protein S17P OS=Methanococcus maripaludis GN=rps17p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            +IG+  K P    E    D  CPF GT+S+RG+I  G   S K + TI+++R    ++ KY+RYEKR +++ AH   C + K GD V + +CR +SKT  F V++
Sbjct:    3 NIGIDVKAPENVCE----DPNCPFHGTLSVRGQIFEGIVTSDKGHDTIVIKREVTGYISKYERYEKRTTSLVAHNPACIKAKVGDTVKVMECRPISKTKSFVVIE 103          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALWD (30S ribosomal protein S17P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps17p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488
            +IGL    P    E +  D  CPF G++S+RG+ L GT  S  M++T+IV R Y   V KY R  KR S IPAH  PC  + EGD V I + R LSKT    V++ I  G
Sbjct:    2 AIGLNVTEP----EVSCADTNCPFHGSLSVRGQTLEGTVASTDMDKTVIVEREYDVRVPKYDRLMKRRSRIPAHAPPCVDLAEGDTVRIAETRPLSKTKSHVVVEQIDTG 107          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRKO (30S ribosomal protein S17P OS=Pyrococcus kodakaraensis GN=rps17p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            + IGL  + P E       D KCP+ G + I GR + G   S K  +T++V R Y H++KKY+RYE R S + AH   C   K GD V+I + R +SKT  + V+ V+
Sbjct:    2 REIGLRVQPPAEVCN----DPKCPWHGNLKIHGRYVEGIVVSDKGKKTVVVERQYYHYLKKYERYELRKSKVHAHNPECINAKVGDKVLIAETRPISKTKSWVVVAVL 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METJA (30S ribosomal protein S17P OS=Methanocaldococcus jannaschii GN=rps17p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            ++IG+  K P    +    DK CPF G + +RG+   G   S K ++T+I++R  + ++KKY+RYE+R + + AH  PC   + GD V + +CR +SKT  F V++
Sbjct:    4 RNIGIQVKAPEVECD----DKNCPFHGNLPVRGQSFVGVVVSDKPHKTVIIKREVVKYIKKYERYERRTTKLAAHNPPCIHARVGDIVRVMECRPISKTKAFVVVE 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_ARCFU (30S ribosomal protein S17P OS=Archaeoglobus fulgidus GN=rps17p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            + IG+  K P    E    D+ CPF GT+S+RG++L G        +T ++ R  + +V K++RY K+ S + AH   C R + GD V IG+CR +SKT  F +L+V+
Sbjct:    2 RDIGIDVKPPERECE----DENCPFHGTLSVRGQLLRGKVVKV-YGKTAVIERELIRYVPKFERYMKKRSKLHAHNPRCIRARPGDIVTIGECRPISKTKSFVILEVV 104          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALMA (30S ribosomal protein S17P OS=Haloarcula marismortui GN=rps17p PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            ++GL  + P E    T  D+ CPF G +S+RG+ L G   S  M +T++V R Y   V KY R+ KR S +PAH   C  +  GD V I +CR LSKT    V+ V+
Sbjct:    2 ALGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVPKYDRFMKRRSRVPAHAPDCLDLAVGDTVTIAECRPLSKTKSHVVVGVV 104          
The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_SULAC2.826e-1740.7430S ribosomal protein S17P OS=Sulfolobus acidocald... [more]
RS17_SULTO3.691e-1743.4030S ribosomal protein S17P OS=Sulfolobus tokodaii ... [more]
RS17_METVA6.295e-1740.0030S ribosomal protein S17P OS=Methanococcus vannie... [more]
RS17_PYRFU1.074e-1641.6730S ribosomal protein S17P OS=Pyrococcus furiosus ... [more]
RS17_METMP1.832e-1640.0030S ribosomal protein S17P OS=Methanococcus maripa... [more]
RS17_HALWD3.124e-1644.5530S ribosomal protein S17P OS=Haloquadratum walsby... [more]
RS17_PYRKO4.080e-1639.8130S ribosomal protein S17P OS=Pyrococcus kodakarae... [more]
RS17_METJA4.080e-1636.7930S ribosomal protein S17P OS=Methanocaldococcus j... [more]
RS17_ARCFU6.960e-1637.9630S ribosomal protein S17P OS=Archaeoglobus fulgid... [more]
RS17_HALMA9.090e-1641.1230S ribosomal protein S17P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bp
GCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAAATCCAGCCATG
GCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAG
CTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGAT
TCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAA
GGGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAG
GGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCA
TCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTAT
GAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGT
GAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCTTTTGTCAAAGA
CGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCT
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