CF504041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_SULAC (30S ribosomal protein S17P OS=Sulfolobus acidocaldarius GN=rps17p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17 Identity = 44/108 (40.74%), Postives = 66/108 (61.11%), Query Frame = 3 Query: 156 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 K++G+ G P + + Y CP+ G++ +RG +L G A+ NRT V R Y+ + KY+RYE+R S I HI C VKEGD+VIIG+ R ++K++ F +L V Sbjct: 9 KNVGIEGVSAPSKTCDDEY----CPYHGSLKVRGIVLEGKLIRARANRTGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIAKSISFVILGV 112
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_SULTO (30S ribosomal protein S17P OS=Sulfolobus tokodaii GN=rps17p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17 Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 3 Query: 156 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVL 470 K+IG+ G P + + D CPF G + +RG IL G + +T +V R+YL + KY+RYE+R S I HI PC VKEGD+VII +CR ++K+V F V+ Sbjct: 12 KNIGIEGVNPPSKTCD----DINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIAKSVSFVVI 113
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METVA (30S ribosomal protein S17P OS=Methanococcus vannielii GN=rps17p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17 Identity = 42/105 (40.00%), Postives = 62/105 (59.05%), Query Frame = 3 Query: 159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 +IG+ K P E D CPF GT+S+RG+I G K + TI+++R ++ KY+RYEKR +++ AH PC K GD V + +CR +SKT F V++ Sbjct: 3 NIGIDVKAPENVCE----DVNCPFHGTLSVRGQIFEGVVSGDKGHNTIVIKREVTGYISKYERYEKRTTSLVAHNPPCINAKTGDVVKVMECRPVSKTKSFVVIE 103
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRFU (30S ribosomal protein S17P OS=Pyrococcus furiosus GN=rps17p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16 Identity = 45/108 (41.67%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y ++ KY+RYE R S I AH PC K GD V+I + R LSKT F V+ V+ Sbjct: 3 RDIGLRVQPPAEKCD----DPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCINAKVGDKVLIAETRPLSKTKHFVVVAVL 106
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METMP (30S ribosomal protein S17P OS=Methanococcus maripaludis GN=rps17p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16 Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 +IG+ K P E D CPF GT+S+RG+I G S K + TI+++R ++ KY+RYEKR +++ AH C + K GD V + +CR +SKT F V++ Sbjct: 3 NIGIDVKAPENVCE----DPNCPFHGTLSVRGQIFEGIVTSDKGHDTIVIKREVTGYISKYERYEKRTTSLVAHNPACIKAKVGDTVKVMECRPISKTKSFVVIE 103
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALWD (30S ribosomal protein S17P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps17p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16 Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 3 Query: 159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488 +IGL P E + D CPF G++S+RG+ L GT S M++T+IV R Y V KY R KR S IPAH PC + EGD V I + R LSKT V++ I G Sbjct: 2 AIGLNVTEP----EVSCADTNCPFHGSLSVRGQTLEGTVASTDMDKTVIVEREYDVRVPKYDRLMKRRSRIPAHAPPCVDLAEGDTVRIAETRPLSKTKSHVVVEQIDTG 107
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRKO (30S ribosomal protein S17P OS=Pyrococcus kodakaraensis GN=rps17p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16 Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 + IGL + P E D KCP+ G + I GR + G S K +T++V R Y H++KKY+RYE R S + AH C K GD V+I + R +SKT + V+ V+ Sbjct: 2 REIGLRVQPPAEVCN----DPKCPWHGNLKIHGRYVEGIVVSDKGKKTVVVERQYYHYLKKYERYELRKSKVHAHNPECINAKVGDKVLIAETRPISKTKSWVVVAVL 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_METJA (30S ribosomal protein S17P OS=Methanocaldococcus jannaschii GN=rps17p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.080e-16 Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 ++IG+ K P + DK CPF G + +RG+ G S K ++T+I++R + ++KKY+RYE+R + + AH PC + GD V + +CR +SKT F V++ Sbjct: 4 RNIGIQVKAPEVECD----DKNCPFHGNLPVRGQSFVGVVVSDKPHKTVIIKREVVKYIKKYERYERRTTKLAAHNPPCIHARVGDIVRVMECRPISKTKAFVVVE 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_ARCFU (30S ribosomal protein S17P OS=Archaeoglobus fulgidus GN=rps17p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 + IG+ K P E D+ CPF GT+S+RG++L G +T ++ R + +V K++RY K+ S + AH C R + GD V IG+CR +SKT F +L+V+ Sbjct: 2 RDIGIDVKPPERECE----DENCPFHGTLSVRGQLLRGKVVKV-YGKTAVIERELIRYVPKFERYMKKRSKLHAHNPRCIRARPGDIVTIGECRPISKTKSFVILEVV 104
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_HALMA (30S ribosomal protein S17P OS=Haloarcula marismortui GN=rps17p PE=1 SV=3) HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 3 Query: 159 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 ++GL + P E T D+ CPF G +S+RG+ L G S M +T++V R Y V KY R+ KR S +PAH C + GD V I +CR LSKT V+ V+ Sbjct: 2 ALGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVPKYDRFMKRRSRVPAHAPDCLDLAVGDTVTIAECRPLSKTKSHVVVGVV 104 The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bpback to top |