CF504041
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_NITMS (30S ribosomal protein S17P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps17p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.239e-14 Identity = 38/107 (35.51%), Postives = 66/107 (61.68%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476 ++IGL K P+ E DK CPF G ++IRG++ G +K +TI ++++ + K++RY + S+I AH+ C V+ GD+V+ +CR +SK+V + V++V Sbjct: 3 RNIGLKVKEPKRECE----DKNCPFHGELAIRGKLFDGKVTGSKAKQTITLQKDAPVYFNKFKRYARGKSSIHAHVPGCIDVESGDNVLTAECRPISKSVSYVVVEV 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_THEAC (30S ribosomal protein S17P OS=Thermoplasma acidophilum GN=rps17p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.924e-14 Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 150 FWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 + ++IGL K P E D CP+ G +S+RG++L G SA M ++ +V R Y ++ KY+R + H+ C ++K GD V +CR L+KT+ F +++ + Sbjct: 2 YTRNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIPKYERKATKIKKYHVHVPDCIKIKPGDTVRFAECRKLAKTISFVIVEKV 107
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_THEVO (30S ribosomal protein S17P OS=Thermoplasma volcanium GN=rps17p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 5.515e-13 Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479 ++IGL P E D CPF G + +RG++L G S M R+++V R Y ++ KY+R + H+ C ++ GD V +CR L+KT+ F V++ + Sbjct: 4 RNIGLDVSVP----EKECTDPHCPFHGNLPVRGQVLTGKVISTAMTRSVVVAREYQQYIPKYERKATKIKKYHVHVPDCIELRVGDTVRFAECRKLAKTISFVVVEKV 107
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRAE (30S ribosomal protein S17P OS=Pyrobaculum aerophilum GN=rps17p PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12 Identity = 35/105 (33.33%), Postives = 59/105 (56.19%), Query Frame = 3 Query: 156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVL 470 K+IG+ P ++ D CP+ G + +R ++L T +M++ +V +LH+++KY RYE+R + + C VK GD VII + R LSKT+ + V+ Sbjct: 4 KNIGIPHVLPPASVCD---DPLCPWHGHLKVRLKLLEVTVEKVRMHKAAVVIHEWLHYIRKYNRYERRRKRMRVRVPECIEVKPGDKVIIAETRPLSKTIAWVVI 105
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17L_METAC (Putative 30S ribosomal protein S17P-like OS=Methanosarcina acetivorans GN=MA_2024 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12 Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 3 Query: 156 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473 + IG+ G K P E D +CPF G +S+RG+IL G S KM + I+++R + KYQR ++ S I A+ PC K GD + I +CR L+K F V++ Sbjct: 2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVMKRYREKWSYKYQRKQRVSSKIHAYSPPCMEAKIGDIITIAECRPLNKGSSFVVIE 104
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_NANEQ (30S ribosomal protein S17P OS=Nanoarchaeum equitans GN=rps17p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12 Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 3 Query: 213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488 DKKCP G + +RG G N+T+ + +++ KY+RYE R + I A++ C + +KEGD+V+IG+ R LSKT F VL + G Sbjct: 16 DKKCPHHGHLKVRGFFFKGKVIKKSDNKTVKIEIIRYYWLPKYERYELRRTRITAYLPECLKDIKEGDYVLIGETRPLSKTKHFVVLGKLKKG 108 The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bpback to top |