CF504041

Overview
NameCF504041
Unique NameCF504041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length491
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:43..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_NITMS (30S ribosomal protein S17P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.239e-14
Identity = 38/107 (35.51%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKV 476
            ++IGL  K P+   E    DK CPF G ++IRG++  G    +K  +TI ++++   +  K++RY +  S+I AH+  C  V+ GD+V+  +CR +SK+V + V++V
Sbjct:    3 RNIGLKVKEPKRECE----DKNCPFHGELAIRGKLFDGKVTGSKAKQTITLQKDAPVYFNKFKRYARGKSSIHAHVPGCIDVESGDNVLTAECRPISKSVSYVVVEV 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_THEAC (30S ribosomal protein S17P OS=Thermoplasma acidophilum GN=rps17p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.924e-14
Identity = 36/110 (32.73%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  150 FWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            + ++IGL  K P    E    D  CP+ G +S+RG++L G   SA M ++ +V R Y  ++ KY+R   +      H+  C ++K GD V   +CR L+KT+ F +++ +
Sbjct:    2 YTRNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIPKYERKATKIKKYHVHVPDCIKIKPGDTVRFAECRKLAKTISFVIVEKV 107          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_THEVO (30S ribosomal protein S17P OS=Thermoplasma volcanium GN=rps17p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.515e-13
Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLKVI 479
            ++IGL    P    E    D  CPF G + +RG++L G   S  M R+++V R Y  ++ KY+R   +      H+  C  ++ GD V   +CR L+KT+ F V++ +
Sbjct:    4 RNIGLDVSVP----EKECTDPHCPFHGNLPVRGQVLTGKVISTAMTRSVVVAREYQQYIPKYERKATKIKKYHVHVPDCIELRVGDTVRFAECRKLAKTISFVVVEKV 107          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_PYRAE (30S ribosomal protein S17P OS=Pyrobaculum aerophilum GN=rps17p PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 35/105 (33.33%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  156 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVL 470
            K+IG+    P  ++     D  CP+ G + +R ++L  T    +M++  +V   +LH+++KY RYE+R   +   +  C  VK GD VII + R LSKT+ + V+
Sbjct:    4 KNIGIPHVLPPASVCD---DPLCPWHGHLKVRLKLLEVTVEKVRMHKAAVVIHEWLHYIRKYNRYERRRKRMRVRVPECIEVKPGDKVIIAETRPLSKTIAWVVI 105          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17L_METAC (Putative 30S ribosomal protein S17P-like OS=Methanosarcina acetivorans GN=MA_2024 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 41/107 (38.32%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  156 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRLLSKTVRFNVLK 473
            + IG+ G K P E       D +CPF G +S+RG+IL G   S KM + I+++R    +  KYQR ++  S I A+  PC   K GD + I +CR L+K   F V++
Sbjct:    2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVMKRYREKWSYKYQRKQRVSSKIHAYSPPCMEAKIGDIITIAECRPLNKGSSFVVIE 104          
BLAST of CF504041 vs. ExPASy Swiss-Prot
Match: RS17_NANEQ (30S ribosomal protein S17P OS=Nanoarchaeum equitans GN=rps17p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  213 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRLLSKTVRFNVLKVIPAG 488
            DKKCP  G + +RG    G       N+T+ +     +++ KY+RYE R + I A++  C + +KEGD+V+IG+ R LSKT  F VL  +  G
Sbjct:   16 DKKCPHHGHLKVRGFFFKGKVIKKSDNKTVKIEIIRYYWLPKYERYELRRTRITAYLPECLKDIKEGDYVLIGETRPLSKTKHFVVLGKLKKG 108          
The following BLAST results are available for this feature:
BLAST of CF504041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS17_NITMS2.239e-1435.5130S ribosomal protein S17P OS=Nitrosopumilus marit... [more]
RS17_THEAC2.924e-1432.7330S ribosomal protein S17P OS=Thermoplasma acidoph... [more]
RS17_THEVO5.515e-1332.4130S ribosomal protein S17P OS=Thermoplasma volcani... [more]
RS17_PYRAE2.096e-1233.3330S ribosomal protein S17P OS=Pyrobaculum aerophil... [more]
RS17L_METAC3.575e-1238.32Putative 30S ribosomal protein S17P-like OS=Methan... [more]
RS17_NANEQ7.964e-1238.7130S ribosomal protein S17P OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504041 ID=CF504041; Name=CF504041; organism=Citrus sinensis; type=EST; length=491bp
GCCCAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAAATCCAGCCATG
GCGGAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAG
CTCGAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGAT
TCTGGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGAGGCAATTGAA
GGGACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAG
GGGTCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCA
TCATCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTAT
GAGAAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGT
GAAAGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCTTTTGTCAAAGA
CGGTCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCT
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