CF504042

Overview
NameCF504042
Unique NameCF504042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:15..461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 4.484e-55
Identity = 100/120 (83.33%), Postives = 107/120 (89.17%), Query Frame = 3
Query:   93 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            F G AV L+PS +E++  G+  MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW
Sbjct:   13 FAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 132          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 5.856e-55
Identity = 101/116 (87.07%), Postives = 105/116 (90.52%), Query Frame = 3
Query:   99 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            GKAV L PS  E+   GR+SMRKT +K VSSGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVW
Sbjct:   16 GKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 128          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.305e-54
Identity = 99/120 (82.50%), Postives = 107/120 (89.17%), Query Frame = 3
Query:   93 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            F GKAV  +PS +E++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTA LSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW
Sbjct:   13 FAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 132          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.305e-54
Identity = 97/118 (82.20%), Postives = 104/118 (88.14%), Query Frame = 3
Query:   93 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW
Sbjct:   13 FAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 130          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 2.907e-54
Identity = 99/118 (83.90%), Postives = 104/118 (88.14%), Query Frame = 3
Query:   99 GKAVNLAPSGNELSNGGRISMRKTGSK--SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            GKAV L P+ +E+   GRI+MRKT  K  +V S SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW
Sbjct:   15 GKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 132          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.958e-54
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = 3
Query:   93 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            F GKAVN+ PS ++++  G+ +MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNGVKFGEAVW
Sbjct:   13 FAGKAVNV-PSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVW 131          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 3.214e-53
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = 3
Query:   93 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            F GKAVN+ PS +E++  G+++MRKT +K+  VSSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADP TFAKNR+LEVIHCRW MLGALGCVFPEL ARNGVKFGEAVW
Sbjct:   13 FAGKAVNV-PSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVW 131          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 4.197e-53
Identity = 95/120 (79.17%), Postives = 105/120 (87.50%), Query Frame = 3
Query:   93 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            F GKAV L+ S +E++  G+++MRKT +K+   SS SPWYGPDRVKYLGP SGE PSYLTGEFP DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL ARNG+KFGEAVW
Sbjct:   13 FAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVW 132          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 4.197e-53
Identity = 99/116 (85.34%), Postives = 102/116 (87.93%), Query Frame = 3
Query:   99 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW
Sbjct:   15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVW 129          
BLAST of CF504042 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 5.481e-53
Identity = 97/119 (81.51%), Postives = 105/119 (88.24%), Query Frame = 3
Query:   93 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVW 446
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVW
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVW 131          
The following BLAST results are available for this feature:
BLAST of CF504042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB27_TOBAC4.484e-5583.33Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_SOYBN5.856e-5587.07Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB25_PETSP1.305e-5482.50Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_SINAL1.305e-5482.20Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_SPIOL2.907e-5483.90Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP4.958e-5482.50Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_PETSP3.214e-5380.83Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_PETSP4.197e-5379.17Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB23_APIGR4.197e-5385.34Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ARATH5.481e-5381.51Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-530 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504042 ID=CF504042; Name=CF504042; organism=Citrus sinensis; type=EST; length=447bp
CTCTTGCTTACACAGCTTCTATTGCTTACCCAGCTTCTGCTTCTCAATTA
AATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGG
CAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCC
GCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCG
TGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCC
CCCAAGCTACTTGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTG
CCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAA
GTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCC
GGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGT
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