CF504044

Overview
NameCF504044
Unique NameCF504044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:56..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 5.022e-47
Identity = 89/121 (73.55%), Postives = 103/121 (85.12%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSM+SSA VAT NR   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDG
Sbjct:    3 SSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.560e-47
Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS+ISSA VAT  R+++ QASMVAPFTGLKSS+ FP TKK N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE++KSPGYYDG
Sbjct:    3 SSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.567e-47
Identity = 87/121 (71.90%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDG
Sbjct:    3 SSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.119e-46
Identity = 88/121 (72.73%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSMISSAT+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLP L+   L KE++YL+RS WIPCLEFELE+G+V+R++   P YYDG
Sbjct:    3 SSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDG 123          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.909e-46
Identity = 90/121 (74.38%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDG
Sbjct:    3 SSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDG 119          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.493e-46
Identity = 83/121 (68.60%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS++SSA VA+ N AS AQASMVAPFTGLKSS+ FP T+K N DIT++ASN G+VQCMKVWPP GL+KFETLSYLP +S+E L KE +YL+R+GW+PC+EF++  G+VYRE+H+SPG+YDG
Sbjct:    3 SSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDG 123          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.493e-46
Identity = 85/123 (69.11%), Postives = 107/123 (86.99%), Query Frame = 1
Query:    1 SSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSM+S+A VAT  A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDG
Sbjct:    3 SSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDG 125          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.493e-46
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDG
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.493e-46
Identity = 87/121 (71.90%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE+HKSPGYYDG
Sbjct:    3 SSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.255e-46
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH+KSPGYYDG
Sbjct:    2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDG 121          
The following BLAST results are available for this feature:
BLAST of CF504044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RBS1_MESCR5.022e-4773.55Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2A_SOLLC6.560e-4773.55Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS8_NICPL8.567e-4771.90Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_GOSHI1.119e-4672.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH1.909e-4674.38Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS_CUCSA2.493e-4668.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR2.493e-4669.11Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS3_PEA2.493e-4671.07Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS3B_SOLLC2.493e-4671.90Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS2_PEA3.255e-4671.07Ribulose bisphosphate carboxylase small chain 3C, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504044 ID=CF504044; Name=CF504044; organism=Citrus sinensis; type=EST; length=378bp
TCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCT
TGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTG
CTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGC
AACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAA
GAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGC
TCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAA
TTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGG
ATACTACGATGGGACGCTACTGGACAAT
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