CF504044

Overview
NameCF504044
Unique NameCF504044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:56..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.616e-45
Identity = 87/121 (71.90%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS++SSA VAT+  A  AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDG
Sbjct:    3 SSVMSSAAVATSTNA--AQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.616e-45
Identity = 88/121 (72.73%), Postives = 101/121 (83.47%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+K NNDITSIASNGGRV CMKVWPP G KKFETLSYLP L++  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDG
Sbjct:    3 SSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDG 119          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.110e-45
Identity = 86/121 (71.07%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS++SSA VAT  R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YL+++GW+PCLEFE E G+VYREH  SPGYYDG
Sbjct:    3 SSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.110e-45
Identity = 88/121 (72.73%), Postives = 100/121 (82.64%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSM+SSA V T    S AQA+MVAPFTGLKSSSAFP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L++  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDG
Sbjct:    3 SSMLSSAAVVT----SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDG 119          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.110e-45
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSM+SSA V T    S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L+D  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDG
Sbjct:    3 SSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDG 119          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.599e-45
Identity = 89/121 (73.55%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYRE+H+SPGYYDG
Sbjct:    3 SSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDG 119          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.599e-45
Identity = 85/122 (69.67%), Postives = 105/122 (86.07%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS+ISSA VAT  R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDG
Sbjct:    3 SSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDG 122          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.701e-45
Identity = 84/120 (70.00%), Postives = 101/120 (84.17%), Query Frame = 1
Query:    4 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            ++ISSA V T NRA + QA++  PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDG
Sbjct:    2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDG 119          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.701e-45
Identity = 84/121 (69.42%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDG
Sbjct:    3 SSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.701e-45
Identity = 85/121 (70.25%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            SS++S+ATVAT   A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHH+SPGYYDG
Sbjct:    3 SSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDG 121          
The following BLAST results are available for this feature:
BLAST of CF504044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RBS2_PETHY1.616e-4571.90Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS2_BRANA1.616e-4572.73Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS_STELP2.110e-4571.07Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_BRANA2.110e-4572.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1B_ARATH2.110e-4571.90Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS_GLYTO3.599e-4573.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU3.599e-4569.67Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TRIRP4.701e-4570.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TOBAC4.701e-4569.42Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN4.701e-4570.25Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504044 ID=CF504044; Name=CF504044; organism=Citrus sinensis; type=EST; length=378bp
TCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCT
TGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTG
CTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGC
AACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAA
GAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGC
TCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAA
TTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGG
ATACTACGATGGGACGCTACTGGACAAT
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