CF504044

Overview
NameCF504044
Unique NameCF504044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:56..432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.676e-32
Identity = 62/104 (59.62%), Postives = 84/104 (80.77%), Query Frame = 1
Query:   52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            + A+ VAPF GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDG
Sbjct:    8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDG 109          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.579e-30
Identity = 59/104 (56.73%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            + A+ VAPF GLKS+++ P  ++++  + ++ SNGGR++CM+VWP  G KKFETLSYLPPLS + LLK+++YL+R+GWIPCLEF  + G+VYRE+  SP YYDG
Sbjct:    9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDG 110          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.120e-29
Identity = 57/104 (54.81%), Postives = 79/104 (75.96%), Query Frame = 1
Query:   52 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            + A+  APF GLKS+++ P  +++   +  + SNGGR++CM+VWP  G KKFETLSYLPPL+ E LLK+++YL+R+ W+PCLEF  E G+VYRE+  SP YYDG
Sbjct:    8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDG 109          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.120e-29
Identity = 61/114 (53.51%), Postives = 84/114 (73.68%), Query Frame = 1
Query:   34 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            A  A    A++V+ FTGLKS++ FP++ K +N          SNGGRV+CM+VWPP G  KFETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R++++SPGYYDG
Sbjct:    2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDG 114          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.056e-29
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 1
Query:  136 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+VY EH+KSP YYDG
Sbjct:    2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDG 77          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.847e-27
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   13 SSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            ++A  A A  +    +++V+ FTGLKS + FP++K  +N          SNG RV+CM+VWPP   KKFETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R +  SPGYYDG
Sbjct:   11 TAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDG 130          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.803e-24
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  172 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            M+VWPP GLKKFETLSYLPPL+ E LL E+NYL+  GWIP LEFE++ G+VYREH KSPGYYDG
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDG 64          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.278e-22
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            +S+++SA V T   AS A  +  +    +++          +   T   +NG RV CM+VW P    KFETLSYLPPLS +AL K+I+Y+I+SGW PC+EF+++ G V RE    PGYYDG
Sbjct:    2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDG 121          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  217 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDG 363
            +YLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDG
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDG 48          
BLAST of CF504044 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.948e-12
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 1
Query:   13 SSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVYRE 333
            SS + A A  A     S V P   LK     PA K       + A+       M VW P   K FET SYLPPLSDE +  +++Y++ +GWIPCLEF E +K +V  E
Sbjct:    8 SSVSAAVARPAR----SSVRPMAALK-----PAVKAAPVAAPAQANQ------MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNE 100          
The following BLAST results are available for this feature:
BLAST of CF504044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RBS1_WHEAT2.676e-3259.62Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_MAIZE5.579e-3056.73Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY2.120e-2954.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH2.120e-2953.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA8.056e-2972.37Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA9.847e-2748.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL7.803e-2475.00Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_MARPA3.278e-2243.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT2.516e-1467.35Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_CHLRE8.948e-1240.74Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504044 ID=CF504044; Name=CF504044; organism=Citrus sinensis; type=EST; length=378bp
TCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCT
TGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTG
CTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGC
AACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAA
GAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGC
TCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAA
TTCGAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGG
ATACTACGATGGGACGCTACTGGACAAT
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