CF504045

Overview
NameCF504045
Unique NameCF504045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1532 contig Csv1_Contig1532:215..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504045 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 1.124e-13
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 3
Query:  153 QKENALLXXXXXXXXXXXXXXGTMHHLTVEAIDAGRKKLYEAKVWVKPWLNFKDLQEFKHVGDS 344
            +K N+LL              GT+++ T+E  +   KKLYEAKVW KPW++FK+LQEFK V  S
Sbjct:   74 KKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 137          

HSP 2 Score: 33.8834 bits (76), Expect = 1.124e-13
Identity = 18/31 (58.06%), Postives = 21/31 (67.74%), Query Frame = 1
Query:   67 LLGGVQESRGAENSNEIESLARFAIEEHNKK 159
            +LGGV E  G EN   +  LARFA+ EHNKK
Sbjct:   46 VLGGV-EPVGNENDLHLVDLARFAVTEHNKK 75          
BLAST of CF504045 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 2.035e-12
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 3
Query:  216 GTMHHLTVEAIDAGRKKLYEAKVWVKPWLNFKDLQEFKHVGD 341
            GTMHHLTVE  D    K+YEAKV  K W N K L+ F H+ D
Sbjct:   59 GTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFNHLHD 100          

HSP 2 Score: 37.7354 bits (86), Expect = 2.035e-12
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 1
Query:   67 LLGGVQESRGAENSNEIESLARFAIEEHNKKRML 168
            ++GGV++     N  ++ESLARFA++EHNK   L
Sbjct:    9 IVGGVRDIDANANDLQVESLARFAVDEHNKNENL 42          
The following BLAST results are available for this feature:
BLAST of CF504045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CYT1_ORYSJ1.124e-1345.31Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT1_ARATH2.035e-1257.14Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-533 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504045 ID=CF504045; Name=CF504045; organism=Citrus sinensis; type=EST; length=549bp
TCTCTGCTTCTGTTTCTGATCATATCTGCGACGGCAAATTCTGAATTTTG
CGACGATAAAATGGCCTTGCTTGGCGGAGTACAGGAATCCCGAGGTGCCG
AAAACAGCAATGAAATTGAAAGCCTCGCTCGATTCGCCATCGAAGAACAC
AACAAAAAGAGAATGCTTTGCTGGAGTTTGTGAAAGTGGTGAAGGCGCAA
GAGCAGGTGGTTGCTGGTACCATGCATCATCTAACAGTGGAGGCTATTGA
TGCTGGTAGGAAGAAGCTATACGAAGCGAAAGTGTGGGTCAAGCCATGGT
TGAATTTTAAGGATTTGCAGGAATTTAAGCACGTTGGTGATTCCCCCGCC
TCTTTCACCTCTTCAGATCTTGGTGTTAAGAAAGATGGTCATTGCCCTGG
ATGGCAGGCAGTTCCCGTACATGATCCTCAAGTCCAGGATGCAGCCAATC
ATGCTATCCAAACCATTCAGCAAAGGTCCAACTCCCTCTTCCCTTATGTA
CTTCAGGAGATTGTTCATGCAAAAGCTGAGGTGATTGAGGATTTTGCGA
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