CF504128

Overview
NameCF504128
Unique NameCF504128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:42..454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.728e-19
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  158 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            G+L  IIS   F+D+L +RNDA CPARGFYTY+AFI AA++FPGFG +G+   RK+E+AAFF Q + +  G      DGP
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGP 163          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.276e-18
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  164 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 370
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF Q + +  G
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTG 95          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  107 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            G G   G    G G  GG +  ++S+E+FE LL +RNDA CPARGFYTYDA + AA AFP F  +G++  RKRE+AAF  Q + +  G      DGP
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGP 163          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.176e-18
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  104 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  Q + +  G      DGP
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGP 153          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.713e-18
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  164 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 370
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF Q + +  G
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTG 95          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.849e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  104 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FPGFG SG+   RKREIAAFFAQ + +  G      DGP
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGP 156          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.333e-18
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  104 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  Q + +  G      DGP
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGP 152          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.333e-18
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  104 CGSGVVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFP FG +GN   RKRE+AAF  Q + +  G  P
Sbjct:   63 CGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWP 160          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.271e-18
Identity = 37/77 (48.05%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  149 TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F GFG +G++  +K+E+AAF AQ + +  G  P
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWP 151          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  137 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG-------DGP 379
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF AQ + +  G       DGP
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGP 130          
The following BLAST results are available for this feature:
BLAST of CF504128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHIB_ARATH5.728e-1955.00Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIP_TOBAC1.276e-1856.52Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI9_ORYSJ1.666e-1848.45Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PHAVU2.176e-1847.96Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIQ_TOBAC3.713e-1855.07Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIT_SOLTU4.849e-1848.51Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI5_PHAVU6.333e-1846.60Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_ORYSJ6.333e-1847.06Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIX_PEA8.271e-1848.05Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_GOSHI1.411e-1751.14Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-616 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504128 ID=CF504128; Name=CF504128; organism=Citrus sinensis; type=EST; length=412bp
GATAATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCT
TACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAG
AATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGAC
GGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACT
TGCTTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACT
TATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTC
TGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAC
TGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATG
CTTGGGGATATT
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