CF504128

Overview
NameCF504128
Unique NameCF504128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:42..454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.037e-16
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  146 GTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FPGFG +G+ T RKREIAAFFAQ + +  G      DGP
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGP 144          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.475e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  146 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 370
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F GFG +G+ T RKRE+AAFFAQ + +  G
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTG 153          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.475e-16
Identity = 46/103 (44.66%), Postives = 59/103 (57.28%), Query Frame = 2
Query:   92 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQLAMKLLG------DGP 379
            SA  CG G          G+ G  +  I+SR +F+ +L +RNDA CPA  FYTYDAF+ AA AFPGF  +G +    KRE+AAF AQ + +  G      DGP
Sbjct:   61 SAAGCGGG----GPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGP 159          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  104 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FPGFG +G+ T RKREIAAF AQ + +  G  P
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWP 140          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16
Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 2
Query:   92 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            +++ CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AA+AFP F N G+   +KREIAAF  Q + +  G  P
Sbjct:   47 TSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWP 139          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.011e-15
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 2
Query:  104 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FPGFG +G+ T RKREIAAF AQ + +  G  P
Sbjct:   53 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWP 144          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.252e-15
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 2
Query:   89 GSAQNCGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            G    C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQ + +  G  P
Sbjct:   52 GCQSQCSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWP 147          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.460e-14
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  104 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQLAMKLLG 370
            C +  +     +G    G  +G +I++ +F  +LP R++++CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF Q + +  G
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTG 101          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.460e-14
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  155 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQ +    G GP
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSG-GP 167          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.460e-14
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  155 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLGDGP 379
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQ +    G GP
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSG-GP 167          
The following BLAST results are available for this feature:
BLAST of CF504128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI2_SOLTU2.037e-1651.76Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC3.475e-1650.67Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI12_ORYSJ3.475e-1644.66Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI3_SOLTU5.927e-1647.31Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_PEA5.927e-1642.71Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIC_SOLLC1.011e-1546.24Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_ORYSJ2.252e-1542.86Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI8_ORYSJ1.460e-1442.22Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ1.460e-1450.65Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.460e-1450.65Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-616 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504128 ID=CF504128; Name=CF504128; organism=Citrus sinensis; type=EST; length=412bp
GATAATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCT
TACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAG
AATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGAC
GGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACT
TGCTTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACT
TATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTC
TGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAC
TGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATG
CTTGGGGATATT
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