CF504128

Overview
NameCF504128
Unique NameCF504128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:42..454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  179 SREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG 370
            +  MFE +LP RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFAQ + +  G
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSG 131          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.614e-13
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 2
Query:  164 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF Q + +  G      DGP
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGP 103          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  164 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF AQ + +  G      DGP
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGP 82          
BLAST of CF504128 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.134e-13
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  140 GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQLAMKLLG------DGP 379
            G+      +  I+S +++  L  +++DA CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ++ +  G      DGP
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGP 126          
The following BLAST results are available for this feature:
BLAST of CF504128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI8_POPTR1.907e-1451.56Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI11_ORYSJ1.614e-1350.00Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHID_SOLLC6.134e-1344.87Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI10_ORYSJ6.134e-1340.70Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-616 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504128 ID=CF504128; Name=CF504128; organism=Citrus sinensis; type=EST; length=412bp
GATAATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCT
TACTAATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAG
AATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGAC
GGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACT
TGCTTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACT
TATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTC
TGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAC
TGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATATG
CTTGGGGATATT
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