CF504130

Overview
NameCF504130
Unique NameCF504130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig521 contig Csv1_Contig521:1..472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_YEAST (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae GN=DRS1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.583e-19
Identity = 61/165 (36.97%), Postives = 87/165 (52.73%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAGS-------KLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK------------KLAVKADKASIEKGKGSGNEVTSAQQAEDLKI 440
            Y+HRVGRTARAGREG +VTFV ++  DRS+++A  K           K   R V    I + +K++E M D +  IL        + +AEM+  K ENM+ HK+EI ARP+RTWF +E +K            K    + K   E+ K  GN   S ++ +  +I
Sbjct:  563 YLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKADGNGARSYRKTKTDRI 727          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_YEAS7 (ATP-dependent RNA helicase DRS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DRS1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.583e-19
Identity = 61/165 (36.97%), Postives = 87/165 (52.73%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAGS-------KLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK------------KLAVKADKASIEKGKGSGNEVTSAQQAEDLKI 440
            Y+HRVGRTARAGREG +VTFV ++  DRS+++A  K           K   R V    I + +K++E M D +  IL        + +AEM+  K ENM+ HK+EI ARP+RTWF +E +K            K    + K   E+ K  GN   S ++ +  +I
Sbjct:  565 YLHRVGRTARAGREGRSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLVESMNDTIEDILVEEKEEKEILRAEMQLRKGENMLKHKKEIQARPRRTWFQSESDKKNSKVLGALSRNKKVTNSKKRKREEAKADGNGARSYRKTKTDRI 729          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_ASHGO (ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.527e-19
Identity = 59/145 (40.69%), Postives = 87/145 (60.00%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDN--DRSLLK-AIAKRAGSKLKSR----IVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQ 422
            Y+HRVGRTARAGREG +VT V ++  +RS++K AI    GSK   R    +V  + + +  K+++  ED +  IL+       + +AEME  K ENM+  KEEI ARP+RTWF +E EKK       +SI +      +VT++++
Sbjct:  551 YLHRVGRTARAGREGKSVTLVGESTQERSIVKDAIKSVDGSKGSGRACGRVVDWKQVEEIHKLVQAKEDVIGEILEEEKQEKEILRAEMEIRKGENMLKFKEEINARPRRTWFQSESEKK------NSSILQALSKNKKVTNSKK 689          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_KLULA (ATP-dependent RNA helicase DRS1 OS=Kluyveromyces lactis GN=DRS1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 54/120 (45.00%), Postives = 74/120 (61.67%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDND------RSLLKAIAKRAGS-KLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 347
            Y+HRVGRTARAGREG +VTFV ++       RS ++++ + A S K  SR V    + + + +I    D V  I++       + +AEME  K ENM+ HKEEI ARP+RTWF +E EKK
Sbjct:  565 YLHRVGRTARAGREGRSVTFVGESSQDRSIVRSAIRSVEENAESGKALSRNVDWTQVEQVNSLIGAKGDVVEEIIEEEKQEKEILRAEMELRKGENMLKHKEEISARPRRTWFQSEAEKK 684          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DDX27_DICDI (Probable ATP-dependent RNA helicase ddx27 OS=Dictyostelium discoideum GN=ddx27 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.858e-19
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 3
Query:    6 SYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK 344
            +Y+HRVGRTARAG +G + +F+TDNDR LLK I  +A +K KSR V++ ++  W   IE++ + + +I++       LRKAE    KAE +I++ +     PK  W+ T++E+
Sbjct:  519 NYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIVTKARNKAKSRSVSQDNVNFWRNRIEELTEDIKSIVREEMKEADLRKAEKTLDKAEKIISNADANVETPK-VWYKTKQEE 630          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.026e-18
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGS---KLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEK---KLAVKADKASIEKGK 389
            Y+HRVGRTARAGR G A+T   + DR +LK + K + +   KL +R +    + K+ K IE++E  V  +L        L+ AE +  K EN++ + +EI +RP RTWF +EK+K   K +   DK S+ K K
Sbjct:  588 YLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGDEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRK 720          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.026e-18
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA---GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKG 392
            Y+HRVGRTARAGR G A T   + DR ++K   K++   GSK+ SR V  +   +W + +  +ED++  +L+       L   E +  +  N+I H+ EI +RPKR WF TEKEK    +   A++    G
Sbjct:  614 YLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRDQGSKVVSRQVPVEETDRWMEKLRGLEDEIEDVLKEEKEERTLSITERDLKRGMNLIEHEAEIKSRPKRVWFETEKEKMAEREKGAAALNAAAG 744          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_PICST (ATP-dependent RNA helicase DRS1 OS=Pichia stipitis GN=DRS1 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.751e-18
Identity = 48/120 (40.00%), Postives = 79/120 (65.83%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDN--DRSLLK-AIAKRAGSKLKSRIVAEQ----SITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKK 347
            Y+HRVGRTARAGR+G +++FV ++  DR+++K AI    G ++K + V+       + + +KI+E  ++ +  +L        + +AEM+  KA NM+ H++EI +RPKRTWF +EK+KK
Sbjct:  555 YLHRVGRTARAGRDGTSISFVGESTSDRNIVKDAIKSLEGGEVKGKAVSRNIDWVDVEQLNKIVESKQEIIEEVLDEEKQAKEILQAEMQLAKASNMMKHEKEIQSRPKRTWFESEKDKK 674          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_CANAL (ATP-dependent RNA helicase DRS1 OS=Candida albicans GN=DRS1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.986e-18
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRA--GSKLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEV 407
            Y+HRVGRTARAGR+G ++TFV ++ +   +AI K A    K  ++ V  +   + +K++E  E  +  +L+       L +AEME TKA N+I H++EI +RPKRTWF  E  ++L     K + +K K   NEV
Sbjct:  457 YLHRVGRTARAGRDGTSITFVGESSQE--RAIVKSAIVNGKGVAKTVDWKQAEETNKLLESKESVIDEVLEEEKEAKELLRAEMELTKASNLIKHEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRK--ANEV 587          
BLAST of CF504130 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.094e-18
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 3
Query:    9 YVHRVGRTARAGREGYAVTFVTDN--DRSLLKAIAKRAGS---------KLKSRIVAEQSITKWSKIIEQMEDQVAAILQXXXXXXILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGK 389
            Y+HRVGRTARAGREG ++TFV ++  DR+++K   K             K  SR V  + + + +KI+E     +  +L        +  AEME +KA NMI H++EI +RP+RTWF +EK+KK   +  +   + GK
Sbjct:  591 YLHRVGRTARAGREGKSITFVGESTQDRAIVKDAIKSISEEQARNSKQGKAVSRNVDWKEVEELNKIVESKATVIEEVLDEEKQAKEMLHAEMELSKATNMIKHEKEIQSRPRRTWFESEKDKKHQTEVMQQLTKHGK 728          
The following BLAST results are available for this feature:
BLAST of CF504130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
DRS1_YEAST1.583e-1936.97ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_YEAS71.583e-1936.97ATP-dependent RNA helicase DRS1 OS=Saccharomyces c... [more]
DRS1_ASHGO3.527e-1940.69ATP-dependent RNA helicase DRS1 OS=Ashbya gossypii... [more]
DRS1_KLULA7.858e-1945.00ATP-dependent RNA helicase DRS1 OS=Kluyveromyces l... [more]
DDX27_DICDI7.858e-1940.71Probable ATP-dependent RNA helicase ddx27 OS=Dicty... [more]
DRS1_SCHPO1.026e-1839.85ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]
DRS1_PHANO1.026e-1837.40ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
DRS1_PICST1.751e-1840.00ATP-dependent RNA helicase DRS1 OS=Pichia stipitis... [more]
DRS1_CANAL2.986e-1840.00ATP-dependent RNA helicase DRS1 OS=Candida albican... [more]
DRS1_DEBHA5.094e-1838.41ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-618 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504130 ID=CF504130; Name=CF504130; organism=Citrus sinensis; type=EST; length=472bp
TTACTAGCTATGTTCATCGAGTGGGACGTACAGCAAGAGCTGGTAGAGAG
GGATATGCTGTTACTTTTGTGACGGACAATGATCGTTCTCTTTTAAAAGC
CATTGCTAAGAGAGCTGGTTCCAAGTTGAAGAGCCGAATCGTCGCCGAGC
AATCAATTACTAAGTGGTCTAAAATAATTGAACAAATGGAAGATCAAGTA
GCTGCTATTCTTCAAGAAGAAAGGGAAGAGAGAATCCTGAGAAAAGCTGA
AATGGAAGCAACAAAGGCAGAAAATATGATTGCTCATAAGGAAGAAATTT
TTGCACGCCCTAAAAGAACTTGGTTTGTGACAGAAAAGGAGAAAAAGCTT
GCAGTAAAGGCAGATAAGGCATCTATTGAAAAAGGAAAAGGGTCTGGAAA
TGAGGTGACAAGTGCTCAACAGGCTGAAGACCTTAAAATAAAGGAAAAGA
GGAAGCGAGAACGTGAGAAAAA
back to top