CF504131

Overview
NameCF504131
Unique NameCF504131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length342
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504131_ssr283 microsatellite CF504131_ssr283:283..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:167..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.832e-21
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EKLPA 193
            RF+KTAAYGHFGRDD DFTWE+VKPLK +K  A
Sbjct:  362 RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          

HSP 2 Score: 60.4622 bits (145), Expect = 3.832e-21
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            D+EILK+VKENFDFRPGMISINLDLK+GG R
Sbjct:  332 DREILKLVKENFDFRPGMISINLDLKKGGKR 362          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK4_HORVU (S-adenosylmethionine synthetase 4 OS=Hordeum vulgare GN=SAM4 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.433e-21
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 2
Query:   89 TGRFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            +GR+LKTAAYGHFGRD  DFTWE+VKPLK EK
Sbjct:  362 SGRYLKTAAYGHFGRDGADFTWEVVKPLKWEK 393          

HSP 2 Score: 59.3066 bits (142), Expect = 8.433e-21
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNRQVLE 105
            DKEIL+IVKENFDFRPGMI INLDLKRGG+ + L+
Sbjct:  333 DKEILEIVKENFDFRPGMIIINLDLKRGGSGRYLK 367          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 8.434e-21
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGRDDPDFTWE+VKPL+ EK
Sbjct:  361 RYLKTAAYGHFGRDDPDFTWEVVKPLELEK 390          

HSP 2 Score: 57.7658 bits (138), Expect = 8.434e-21
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            DKEILKIVKENFDFRPG+I+INL LKRGG R
Sbjct:  331 DKEILKIVKENFDFRPGLITINLGLKRGGYR 361          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.856e-20
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 2
Query:   92 GRFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            GR+LKTAAYGHFGR+DPDFTWE+VKPLK E+
Sbjct:  363 GRYLKTAAYGHFGREDPDFTWEVVKPLKWEE 393          

HSP 2 Score: 55.8398 bits (133), Expect = 1.856e-20
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNRQVLE 105
            D+EIL+IV ENFDFRPGMI INLDL RGGN + L+
Sbjct:  333 DREILRIVTENFDFRPGMIIINLDLMRGGNGRYLK 367          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.140e-20
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGRDDPDFTWE+VKPLK +K
Sbjct:  364 RYLKTAAYGHFGRDDPDFTWEVVKPLKWDK 393          

HSP 2 Score: 55.4546 bits (132), Expect = 3.140e-20
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            DK+ILKIVKE FDFRPGMI+INLDL +GG+R
Sbjct:  334 DKDILKIVKETFDFRPGMIAINLDLLKGGSR 364          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK_WHEAT (S-adenosylmethionine synthetase OS=Triticum aestivum GN=SAMS PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.084e-20
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNRQVLE 105
            DKEIL+IVKENFDFRPGMI INLDLKRGG  + L+
Sbjct:  333 DKEILEIVKENFDFRPGMIIINLDLKRGGKGRYLK 367          

HSP 2 Score: 58.9214 bits (141), Expect = 4.084e-20
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 2
Query:   92 GRFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            GR+LKTAAYGHFGR+  DFTWE+VKPLK EK
Sbjct:  363 GRYLKTAAYGHFGREGADFTWEVVKPLKWEK 393          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 8.987e-20
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            D EILK++KENFDFRPGMISINLDLKRGGN
Sbjct:  332 DAEILKLIKENFDFRPGMISINLDLKRGGN 361          

HSP 2 Score: 56.225 bits (134), Expect = 8.987e-20
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            RF KTAAYGHFGR+DPDFTWE VK LK EK
Sbjct:  363 RFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.988e-20
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGRDD DFTWE+VKPLK EK
Sbjct:  360 RYLKTAAYGHFGRDDADFTWEVVKPLKWEK 389          

HSP 2 Score: 55.8398 bits (133), Expect = 8.988e-20
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            DK+ILKIVKE FDFRPGMI+ NLDL RGGNR
Sbjct:  330 DKDILKIVKETFDFRPGMIANNLDLLRGGNR 360          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.169e-19
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGRDD DFTWE VKPLK EK
Sbjct:  364 RYLKTAAYGHFGRDDADFTWETVKPLKWEK 393          

HSP 2 Score: 56.9954 bits (136), Expect = 1.169e-19
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            DKEILKIVKE+FDFRPGMI+INLDL +GG+R
Sbjct:  334 DKEILKIVKESFDFRPGMIAINLDLLKGGSR 364          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.520e-19
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK*EK 184
            R+LKTAAYGHFGRDD DFTWE VKPLK EK
Sbjct:  364 RYLKTAAYGHFGRDDADFTWETVKPLKWEK 393          

HSP 2 Score: 56.6102 bits (135), Expect = 1.520e-19
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNR 93
            DKEILKIVKE FDFRPGMI+INLDL +GG+R
Sbjct:  334 DKEILKIVKETFDFRPGMIAINLDLLKGGSR 364          
The following BLAST results are available for this feature:
BLAST of CF504131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK2_HORVU3.832e-2178.79S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK4_HORVU8.433e-2181.25S-adenosylmethionine synthetase 4 OS=Hordeum vulga... [more]
METK_MUSAC8.434e-2186.67S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK3_ORYSJ1.856e-2083.87S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK1_BETVU3.140e-2086.67S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK_WHEAT4.084e-2080.00S-adenosylmethionine synthetase OS=Triticum aestiv... [more]
METK1_PICSI8.987e-2090.00S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK_MESCR8.988e-2086.67S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK3_ATRNU1.169e-1986.67S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK4_ATRNU1.520e-1986.67S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-619 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504131 ID=CF504131; Name=CF504131; organism=Citrus sinensis; type=EST; length=342bp
GACAAGGAAATTTTGAAGATTGTGAAGGAGAATTTTGATTTTAGGCCTGG
GATGATTTCTATTAATCTTGATCTCAAGAGGGGTGGCAACCGGCAGGTTC
TTGAAGACTGCCGCTTATGGGCACTTTGGCAGAGATGATCCTGATTTCAC
TTGGGAGATTGTTAAGCCACTCAAGTAGGAGAAACTTCCAGCTTAAACTA
ATCAAGGATGAGCTGCTGGCCTCTCATTGGTTCTTATATATGCTTACTTT
TTTTTTTACTTTTGTTTCAGTTACATGAATGTTTTCTTTCTTTCTTTCTT
TTTCTTTTCCTTTTTTTTTTTTTTTATAAATATGTTTAATGG
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