CF504131

Overview
NameCF504131
Unique NameCF504131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length342
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504131_ssr283 microsatellite CF504131_ssr283:283..298. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:167..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.321e-17
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGM+SINLDL RGGN
Sbjct:  330 DKDILVLIKENFDFRPGMMSINLDLLRGGN 359          

HSP 2 Score: 54.299 bits (129), Expect = 1.321e-17
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  361 RYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.903e-17
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGM+SINLDL RGGN
Sbjct:  330 DKDILTLIKENFDFRPGMMSINLDLLRGGN 359          

HSP 2 Score: 52.7582 bits (125), Expect = 2.903e-17
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRDDPDF+WE VK LK
Sbjct:  361 RYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.773e-17
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGM+SINLDL RGGN
Sbjct:  330 DKDILTLIKENFDFRPGMMSINLDLLRGGN 359          

HSP 2 Score: 52.373 bits (124), Expect = 3.773e-17
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPL 172
            R+ KTAAYGHFGRDDPDFTWE VK L
Sbjct:  361 RYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.290e-17
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGMI+INLDLKRGGN
Sbjct:  330 DKDILALIKENFDFRPGMIAINLDLKRGGN 359          

HSP 2 Score: 48.521 bits (114), Expect = 8.290e-17
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAA GH GRDDPDFTWE VK LK
Sbjct:  361 RYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 8.290e-17
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGMI+INLDLKRGGN
Sbjct:  330 DKDILALIKENFDFRPGMIAINLDLKRGGN 359          

HSP 2 Score: 48.521 bits (114), Expect = 8.290e-17
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRDD D TWE VK LK
Sbjct:  361 RYQKTAAYGHFGRDDADLTWETVKILK 387          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.821e-16
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGN 90
            DK+IL ++KENFDFRPGMI+INLDL RGGN
Sbjct:  330 DKDILALIKENFDFRPGMIAINLDLLRGGN 359          

HSP 2 Score: 50.0618 bits (118), Expect = 1.821e-16
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRD+ DFTWE VK LK
Sbjct:  361 RYQKTAAYGHFGRDEADFTWETVKALK 387          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 2.367e-16
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 1
Query:    4 KEILKIVKENFDFRPGMISINLDLKRGGN 90
            K++L ++KENFDFRPGM+SINLDL RGGN
Sbjct:  331 KDVLTLIKENFDFRPGMMSINLDLLRGGN 359          

HSP 2 Score: 52.373 bits (124), Expect = 2.367e-16
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPL 172
            R+ KTAAYGHFGRDDPDFTWE VK L
Sbjct:  361 RYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.076e-16
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPDFTWEIVKPLK 175
            R+ KTAAYGHFGRDDPDFTWE VK L+
Sbjct:  364 RYQKTAAYGHFGRDDPDFTWETVKKLE 390          

HSP 2 Score: 51.6026 bits (122), Expect = 3.076e-16
Identity = 21/32 (65.62%), Postives = 29/32 (90.62%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNRQ 96
            D EILK+++++FDFRPG+I  NLDLKRGGN++
Sbjct:  333 DAEILKLIRKHFDFRPGLIGKNLDLKRGGNKR 364          
BLAST of CF504131 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 8.325e-12
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 DKEILKIVKENFDFRPGMISINLDLKRGGNRQ 96
            D EIL+ VKE FDFR GMI  +LDLKRGGN++
Sbjct:  329 DSEILEKVKEKFDFRAGMIGKSLDLKRGGNKR 360          

HSP 2 Score: 42.3578 bits (98), Expect = 8.325e-12
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 2
Query:   95 RFLKTAAYGHFGRDDPD-FTWEIVKPL 172
            R+  TAAYGHFGRDD D FTWE V PL
Sbjct:  360 RYQTTAAYGHFGRDDTDVFTWEKVVPL 386          
The following BLAST results are available for this feature:
BLAST of CF504131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
METK2_SOLTU1.321e-1780.00S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK1_TOBAC2.903e-1780.00S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK1_PETHY3.773e-1780.00S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK3_CATRO8.290e-1783.33S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_ACTCH8.290e-1783.33S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]
METK2_TOBAC1.821e-1680.00S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK2_PETHY2.367e-1675.86S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK_CHLRE3.076e-1681.48S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTTA8.325e-1268.75S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-619 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504131 ID=CF504131; Name=CF504131; organism=Citrus sinensis; type=EST; length=342bp
GACAAGGAAATTTTGAAGATTGTGAAGGAGAATTTTGATTTTAGGCCTGG
GATGATTTCTATTAATCTTGATCTCAAGAGGGGTGGCAACCGGCAGGTTC
TTGAAGACTGCCGCTTATGGGCACTTTGGCAGAGATGATCCTGATTTCAC
TTGGGAGATTGTTAAGCCACTCAAGTAGGAGAAACTTCCAGCTTAAACTA
ATCAAGGATGAGCTGCTGGCCTCTCATTGGTTCTTATATATGCTTACTTT
TTTTTTTACTTTTGTTTCAGTTACATGAATGTTTTCTTTCTTTCTTTCTT
TTTCTTTTCCTTTTTTTTTTTTTTTATAAATATGTTTAATGG
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