CF504140

Overview
NameCF504140
Unique NameCF504140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: PT110_ORYSJ (Probable inorganic phosphate transporter 1-10 OS=Oryza sativa subsp. japonica GN=PHT1-10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.198e-31
Identity = 63/133 (47.37%), Postives = 85/133 (63.91%), Query Frame = 3
Query:   48 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYH-HWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            L      WFLLD+ YYS  LFQ  I+  +   P    +NA +E + +A+ Q +IA+ ST+PGY+  V LID++GR  +Q+ GF  M VF+FALA PY  +W       G++VLYSLTFF +N GPNTTTF+ P
Sbjct:  296 LFACAAAWFLLDIPYYSSTLFQSQIYRPL--FPAPGLINAFQEAFNVAKFQAVIAVASTIPGYFVAVLLIDRVGRRCLQMAGFLLMAVFLFALAGPYDGYWRDHGAHAGYIVLYSLTFFSANLGPNTTTFILP 426          

HSP 2 Score: 23.0978 bits (48), Expect = 6.198e-31
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:    4 FGLFSAKFVRRHG 42
            +GL S +FVR+HG
Sbjct:  281 YGLLSRRFVRQHG 293          
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: PHT18_ARATH (Probable inorganic phosphate transporter 1-8 OS=Arabidopsis thaliana GN=PHT1-8 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.188e-30
Identity = 64/134 (47.76%), Postives = 82/134 (61.19%), Query Frame = 3
Query:   48 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYH-HWTLPDH-RIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            L   +  WFL+D+ +Y+ NL    IF+     P     N  +  +++A    +IA CST+PGYWFTV  IDKIGR  IQ+MGFFFM V      IPY  +W+  +H   GF+VLY L FFF NFGPNTTTF+ P
Sbjct:  286 LFAASFNWFLVDIVFYTSNLLLSHIFSHYSKKPSTAE-NVYDAAFEVAELGAIIAACSTIPGYWFTVYFIDKIGRVKIQIMGFFFMAVIYLVAGIPYSWYWSKHEHNNKGFMVLYGLVFFFCNFGPNTTTFIIP 418          
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: PHT19_ARATH (Probable inorganic phosphate transporter 1-9 OS=Arabidopsis thaliana GN=PHT1-9 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.159e-29
Identity = 65/145 (44.83%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   18 RKVCSPPWTSLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDH---RIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            R+  S     L   +  WFL+DV +Y+ NL    IF          + N  +  +++A+   ++A CST+PGYWFTV  IDKIGR  IQ+MGFF M V      IPY  W    H     GF+VLY L FFFSNFGPNTTTF+ P
Sbjct:  287 RRFLSLHGRDLFAASANWFLVDVVFYTSNLLLSQIFNFSN--KPLNSTNVYDSAFEVAKLAAIVAACSTIPGYWFTVYFIDKIGRVKIQMMGFFLMAVVYLVAGIPY-SWYWSKHEKTNKGFMVLYGLIFFFSNFGPNTTTFIIP 428          
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: PHO84_YEAST (Inorganic phosphate transporter PHO84 OS=Saccharomyces cerevisiae GN=PHO84 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.571e-20
Identity = 53/132 (40.15%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   48 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            L+GT  +WF LDVA+Y  +L    I   IG+   A + N  +++Y  A    ++    ++PGYW +V  +D IGR  IQL GF  +T     +   YH   L DH  G + LY +  FF NFGPNTTTF+ P
Sbjct:  347 LLGTAGSWFTLDVAFYGLSLNSAVILQTIGY---AGSKNVYKKLYDTAVGNLILICAGSLPGYWVSVFTVDIIGRKPIQLAGFIILTALFCVIGFAYH--KLGDH--GLLALYVICQFFQNFGPNTTTFIVP 471          
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: YAEC_SCHPO (Putative inorganic phosphate transporter C23D3.12 OS=Schizosaccharomyces pombe GN=SPAC23D3.12 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.623e-19
Identity = 56/132 (42.42%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   48 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            L+ T V+WFLLD+A+Y  NL Q  I  AIG+   +   N    + + A    +IA+   VPGYWFTV L++K+GR  IQL G  F+T  MFA+            R    V+     FFSNFGPN TTF+ P
Sbjct:  337 LLATAVSWFLLDIAFYGVNLNQSVILKAIGF---SSGKNEYHTLMRGAIGNLIIAIAGYVPGYWFTVFLVEKLGRKWIQLQG-LFITGLMFAILAGSWDTISTGGRFACFVIAQ---FFSNFGPNATTFLYP 461          
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: YHD1_SCHPO (Putative inorganic phosphate transporter C1683.01 OS=Schizosaccharomyces pombe GN=SPBC1683.01 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.245e-17
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   48 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            L+GT+V WFLLD+A+Y  NL Q  I   IG+   +   N    + K A    +IA+   VPGYWF V L++ +GR  IQL G F +T  MFA+     +      R    V+  L   FSNFGPN+TTF+ P
Sbjct:  349 LLGTSVCWFLLDIAFYGVNLNQSVILKNIGF---SSGTNEYRTLMKNAIGNLIIAVAGYVPGYWFNVFLVEILGRKWIQLQG-FVITGLMFAILAGRWNEISTGGRFACFVIAQL---FSNFGPNSTTFIYP 473          
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: YBN1_SCHPO (Putative inorganic phosphate transporter C8E4.01c OS=Schizosaccharomyces pombe GN=SPBC8E4.01c PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.626e-17
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   48 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            L+GT+V WFLLD+A+Y  NL Q  I   IG+   +   N    + K A    +IA+   VPGYWF V L++ +GR  IQL G F +T  MFA+     +      R    V+  L   FSNFGPN+TTF+ P
Sbjct:  348 LLGTSVCWFLLDIAFYGVNLNQSVILKNIGF---STGTNEYRTLMKNAIGNLIIAVAGYVPGYWFNVFLVEILGRKWIQLQG-FVITGLMFAILAGRWNEISTGGRFACFVIAQL---FSNFGPNSTTFIYP 472          
BLAST of CF504140 vs. ExPASy Swiss-Prot
Match: YCX2_SCHPO (Probable metabolite transporter C2H8.02 OS=Schizosaccharomyces pombe GN=SPCC2H8.02 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.522e-15
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 3
Query:   48 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVGP 443
            LIG+ ++WFLLD+A+Y  NL Q  I   +G+    K +N    + K A    +IA+   +PGYW +V LI+ +GR  IQ+ GF    +    LA  +   +      G     +L  FF NFGPNTT FV P
Sbjct:  358 LIGSALSWFLLDIAFYGINLNQSVILQEMGF---NKGVNEYHILQKNAIGNLIIAVAGYIPGYWVSVVLIEVMGRKWIQIQGFLICCLLFGVLAGTWETISTG----GRFACVALAQFFFNFGPNTTCFVIP 482          
The following BLAST results are available for this feature:
BLAST of CF504140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PT110_ORYSJ6.198e-3147.37Probable inorganic phosphate transporter 1-10 OS=O... [more]
PHT18_ARATH2.188e-3047.76Probable inorganic phosphate transporter 1-8 OS=Ar... [more]
PHT19_ARATH3.159e-2944.83Probable inorganic phosphate transporter 1-9 OS=Ar... [more]
PHO84_YEAST1.571e-2040.15Inorganic phosphate transporter PHO84 OS=Saccharom... [more]
YAEC_SCHPO8.623e-1942.42Putative inorganic phosphate transporter C23D3.12 ... [more]
YHD1_SCHPO1.245e-1741.67Putative inorganic phosphate transporter C1683.01 ... [more]
YBN1_SCHPO1.626e-1741.67Putative inorganic phosphate transporter C8E4.01c ... [more]
YCX2_SCHPO1.522e-1537.88Probable metabolite transporter C2H8.02 OS=Schizos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-628 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504140 ID=CF504140; Name=CF504140; organism=Citrus sinensis; type=EST; length=445bp
GACTTTGGTTTGTTTAGCGCAAAGTTTGTTCGCCGCCATGGACTTCACTG
ATTGGAACCACAGTCACCTGGTTTTTGTTGGACGTTGCATACTACAGTCA
GAACCTATTCCAAAAGGACATTTTCACTGCCATTGGTTGGATTCCTAAGG
CCAAAACCATGAATGCAATTGAAGAAGTATACAAAATTGCTAGGGCACAA
ACGCTCATTGCTCTTTGCAGCACTGTGCCTGGATACTGGTTCACTGTGGC
ATTAATCGACAAGATAGGAAGATTTGCCATTCAATTGATGGGTTTCTTCT
TCATGACAGTCTTCATGTTTGCATTAGCCATTCCTTATCATCACTGGACT
TTGCCGGATCACCGAATTGGGTTTGTTGTGCTCTACTCACTGACCTTCTT
CTTCTCCAACTTTGGCCCCAATACCACCACATTTGTTGGTCCGGC
back to top