CF504141

Overview
NameCF504141
Unique NameCF504141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:9..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METKA (30S ribosomal protein S17P OS=Methanopyrus kandleri GN=rps17p PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.514e-20
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  181 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            R  K IGLG K PR   +    D  CPF G + +RG IL G   S +M++T+IV R Y  + +KY+R+E+R S IPAH  PC   +EGD V I +CRPLS
Sbjct:    6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREYYRYDRKYERWERRRSRIPAHNPPCIDAQEGDKVRIAECRPLS 101          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_UNCMA (30S ribosomal protein S17P OS=Uncultured methanogenic archaeon RC-I GN=rps17p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            K IGL  K P+        D +CPF G++++RG+I  GT  SAKM+++++V R YL    KY RYEKR S + AH  PC   KEGD V+I +CRPLS
Sbjct:    3 KDIGLNVKAPKTECN----DPQCPFHGSLAVRGQIFEGTVVSAKMSKSVVVSREYLKRDLKYDRYEKRRSKLHAHNPPCINAKEGDKVVIAECRPLS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METHJ (30S ribosomal protein S17P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps17p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.752e-20
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL    P +       D  CPF GT+ +RG+++ G   S KM  +++V+R+YLHFV+KYQRYEKR S I AH  PC   + GD V I +CRPLS
Sbjct:    3 RDIGLNVPVPEKDCS----DVNCPFHGTLPVRGQVITGKVVSDKMTGSVVVQRDYLHFVRKYQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METBF (30S ribosomal protein S17P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps17p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.752e-20
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL    P E    +Y    CPF GT+S+RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S + AH  PC   K GD V I +CR +S
Sbjct:    3 RDIGLNIPAPSEECNDSY----CPFHGTLSVRGQILVGTVVSSKMDNTVVIERQYMKLVPKYQRYEKRRSKVHAHNPPCISAKVGDIVTIAECRRIS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METAC (30S ribosomal protein S17P OS=Methanosarcina acetivorans GN=rps17p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.512e-20
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CRP+S
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPIS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METPE (30S ribosomal protein S17P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps17p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.281e-19
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            ++IGL  + P E  +    D  CPF G +S+RG+++ G   S +M  TI+V R+YLH+V+KY+RYEKR S + AH  PC +VK GD V I +CRP+S
Sbjct:    3 RNIGLNVQPPVEECQ----DVNCPFHGNLSVRGQVITGKVVSDRMLGTIVVGRDYLHYVRKYKRYEKRSSKLHAHNPPCLQVKVGDIVKIAECRPIS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METMA (30S ribosomal protein S17P OS=Methanosarcina mazei GN=rps17p PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.673e-19
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL    P E  +  Y    CPF GT+ +RG+IL GT  S+KM+ T+++ R Y+  V KYQRYEKR S I AH   C   K GD V I +CRP+S
Sbjct:    3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIVECRPIS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METB6 (30S ribosomal protein S17P OS=Methanoregula boonei (strain 6A8) GN=rps17p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.673e-19
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            ++IGL  + P++  +    D  CPF GT+ +RG+++ G   S KM  T++V R+YLH+V+KY RYEKR S + AH  PC + K GD V I +CRPLS
Sbjct:    3 QNIGLNVQPPKQECK----DVNCPFHGTLPVRGQVITGKVVSDKMMGTVVVARDYLHYVRKYNRYEKRISKLHAHNPPCIQAKVGDLVKIAECRPLS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METLZ (30S ribosomal protein S17P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps17p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.186e-19
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            K+IGL    P +  +    D  CPF G++ +RG+++ G   S +M  T++V RN+LH V+KY RYEKR S I AH++PC   K GD V I +CRPL+
Sbjct:    3 KNIGLNVAVPEKDCD----DVNCPFHGSLPVRGQVITGKVVSERMQGTVVVERNFLHKVQKYDRYEKRSSKIHAHMAPCLNAKIGDEVKIAECRPLN 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METMJ (30S ribosomal protein S17P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.728e-19
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            ++IGL    P    E    D  CPF GT+ +RG+++ G   S +MN T++V R +LH+VKKY+RYEKR S   AH +PC     GD V I +CRPLS
Sbjct:    3 RNIGLDVPIPETECE----DVNCPFHGTLPVRGQVITGKVVSDRMNGTVVVEREFLHYVKKYKRYEKRRSRYHAHSTPCINAGVGDVVRIAECRPLS 95          
The following BLAST results are available for this feature:
BLAST of CF504141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS17_METKA1.514e-2048.0030S ribosomal protein S17P OS=Methanopyrus kandler... [more]
RS17_UNCMA2.582e-2048.4530S ribosomal protein S17P OS=Uncultured methanoge... [more]
RS17_METHJ5.752e-2047.4230S ribosomal protein S17P OS=Methanospirillum hun... [more]
RS17_METBF5.752e-2047.4230S ribosomal protein S17P OS=Methanosarcina barke... [more]
RS17_METAC7.512e-2047.4230S ribosomal protein S17P OS=Methanosarcina aceti... [more]
RS17_METPE1.281e-1947.4230S ribosomal protein S17P OS=Methanosphaerula pal... [more]
RS17_METMA1.673e-1947.4230S ribosomal protein S17P OS=Methanosarcina mazei... [more]
RS17_METB61.673e-1946.3930S ribosomal protein S17P OS=Methanoregula boonei... [more]
RS17_METLZ2.186e-1945.3630S ribosomal protein S17P OS=Methanocorpusculum l... [more]
RS17_METMJ3.728e-1946.3930S ribosomal protein S17P OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-629 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504141 ID=CF504141; Name=CF504141; organism=Citrus sinensis; type=EST; length=481bp
ATTTAGGGTTTTCTGCATTGTGTTATCCACCTCCGCCCAGTGCGTTCATC
ATCCTCAACAACTCAGCCCCGAAATCCAGCCATGGCGGAGCAGACCGAGA
AGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGCTCGAAGAAGGCAGGA
AAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGG
CTTGGGATTCAAGACTCCCAGAGAGGCAATTGAAGGGACTTACATTGATA
AGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCT
GGTACTTGCCACAGTGCTAAGATGAACAGAACCATCATCGTTAGGCGTAA
CTACCTTCACTTTGTGAAGAAATATCAGAGGTATGAGAAGAGGCACTCTA
ACATTCCAGCACACATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCAT
GTTATCATTGGCCAGTGCAGGCCTTTGTCAA
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