CF504141
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METKA (30S ribosomal protein S17P OS=Methanopyrus kandleri GN=rps17p PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.514e-20 Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 181 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 R K IGLG K PR + D CPF G + +RG IL G S +M++T+IV R Y + +KY+R+E+R S IPAH PC +EGD V I +CRPLS Sbjct: 6 RMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREYYRYDRKYERWERRRSRIPAHNPPCIDAQEGDKVRIAECRPLS 101
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_UNCMA (30S ribosomal protein S17P OS=Uncultured methanogenic archaeon RC-I GN=rps17p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20 Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 K IGL K P+ D +CPF G++++RG+I GT SAKM+++++V R YL KY RYEKR S + AH PC KEGD V+I +CRPLS Sbjct: 3 KDIGLNVKAPKTECN----DPQCPFHGSLAVRGQIFEGTVVSAKMSKSVVVSREYLKRDLKYDRYEKRRSKLHAHNPPCINAKEGDKVVIAECRPLS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METHJ (30S ribosomal protein S17P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps17p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.752e-20 Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + IGL P + D CPF GT+ +RG+++ G S KM +++V+R+YLHFV+KYQRYEKR S I AH PC + GD V I +CRPLS Sbjct: 3 RDIGLNVPVPEKDCS----DVNCPFHGTLPVRGQVITGKVVSDKMTGSVVVQRDYLHFVRKYQRYEKRSSKIHAHNPPCLHARVGDMVSIAECRPLS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METBF (30S ribosomal protein S17P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps17p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 5.752e-20 Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + IGL P E +Y CPF GT+S+RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S + AH PC K GD V I +CR +S Sbjct: 3 RDIGLNIPAPSEECNDSY----CPFHGTLSVRGQILVGTVVSSKMDNTVVIERQYMKLVPKYQRYEKRRSKVHAHNPPCISAKVGDIVTIAECRRIS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METAC (30S ribosomal protein S17P OS=Methanosarcina acetivorans GN=rps17p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 7.512e-20 Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + IGL P E + Y CPF GT+ +RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S I AH C K GD V I +CRP+S Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIAECRPIS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METPE (30S ribosomal protein S17P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps17p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.281e-19 Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 ++IGL + P E + D CPF G +S+RG+++ G S +M TI+V R+YLH+V+KY+RYEKR S + AH PC +VK GD V I +CRP+S Sbjct: 3 RNIGLNVQPPVEECQ----DVNCPFHGNLSVRGQVITGKVVSDRMLGTIVVGRDYLHYVRKYKRYEKRSSKLHAHNPPCLQVKVGDIVKIAECRPIS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METMA (30S ribosomal protein S17P OS=Methanosarcina mazei GN=rps17p PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 1.673e-19 Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + IGL P E + Y CPF GT+ +RG+IL GT S+KM+ T+++ R Y+ V KYQRYEKR S I AH C K GD V I +CRP+S Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVSKYQRYEKRRSKIHAHNPACISAKVGDIVTIVECRPIS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METB6 (30S ribosomal protein S17P OS=Methanoregula boonei (strain 6A8) GN=rps17p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.673e-19 Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 ++IGL + P++ + D CPF GT+ +RG+++ G S KM T++V R+YLH+V+KY RYEKR S + AH PC + K GD V I +CRPLS Sbjct: 3 QNIGLNVQPPKQECK----DVNCPFHGTLPVRGQVITGKVVSDKMMGTVVVARDYLHYVRKYNRYEKRISKLHAHNPPCIQAKVGDLVKIAECRPLS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METLZ (30S ribosomal protein S17P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps17p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.186e-19 Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 K+IGL P + + D CPF G++ +RG+++ G S +M T++V RN+LH V+KY RYEKR S I AH++PC K GD V I +CRPL+ Sbjct: 3 KNIGLNVAVPEKDCD----DVNCPFHGSLPVRGQVITGKVVSERMQGTVVVERNFLHKVQKYDRYEKRSSKIHAHMAPCLNAKIGDEVKIAECRPLN 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METMJ (30S ribosomal protein S17P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps17p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 3.728e-19 Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 ++IGL P E D CPF GT+ +RG+++ G S +MN T++V R +LH+VKKY+RYEKR S AH +PC GD V I +CRPLS Sbjct: 3 RNIGLDVPIPETECE----DVNCPFHGTLPVRGQVITGKVVSDRMNGTVVVEREFLHYVKKYKRYEKRRSRYHAHSTPCINAGVGDVVRIAECRPLS 95 The following BLAST results are available for this feature:
BLAST of CF504141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504141 ID=CF504141; Name=CF504141; organism=Citrus sinensis; type=EST; length=481bpback to top |