CF504141
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_HALSA (30S ribosomal protein S17P OS=Halobacterium salinarium GN=rps17p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 7.031e-18 Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 +IGL P EGT D+ CPF G +S+RG++L G S M +T++V R Y FV KY RY KR S +PAH CF + GD V I + RPLS Sbjct: 2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLS 93
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_HALS3 (30S ribosomal protein S17P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps17p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 7.031e-18 Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1 Query: 193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 +IGL P EGT D+ CPF G +S+RG++L G S M +T++V R Y FV KY RY KR S +PAH CF + GD V I + RPLS Sbjct: 2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLS 93
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METBU (30S ribosomal protein S17P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps17p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.566e-17 Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 K IGL P + + D CPF G + +RG+I GT SAKM+RT+++++ + KYQRYEKR S I AH PC K GD V I +CRPLS Sbjct: 3 KDIGLDIPEPTKECD----DINCPFHGELPVRGQIHVGTVVSAKMDRTVVIQQRREKLINKYQRYEKRQSKIHAHNPPCIDAKVGDIVTIAECRPLS 95
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PYRHO (30S ribosomal protein S17P OS=Pyrococcus horikoshii GN=rps17p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y H++KKY+RYE R S I AH PC K GD V+I + RPLS Sbjct: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVISDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLS 98
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PYRAB (30S ribosomal protein S17P OS=Pyrococcus abyssi GN=rps17p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17 Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1 Query: 190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 + IGL + P E + D KCP+ G + I GR+ G S K +T+ V R Y H++KKY+RYE R S I AH PC K GD V+I + RPLS Sbjct: 6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLS 98
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_SULSO (30S ribosomal protein S17P OS=Sulfolobus solfataricus GN=rps17p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.015e-16 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 247 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 D+ CP+ G++ +RG L G + + ++ R YL++ KY+RYE+R S I AH+ PC V+EGD VIIG+CRPLS Sbjct: 25 DEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLS 102
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METTH (30S ribosomal protein S17P OS=Methanobacterium thermoautotrophicum GN=rps17p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16 Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1 Query: 247 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 D CPF G + +RG+IL GT S K RT+ V R++ F++KY+RYEKR S I AH C V+ GD V I +CRPLS Sbjct: 15 DPNCPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRKYERYEKRKSKIKAHKPDCIDVRVGDTVKIAECRPLS 92
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METST (30S ribosomal protein S17P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps17p PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16 Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 196 IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 +G+ K P + D CPF G +S+RG+++ GT S K +RTI V R++ ++ K++RYEKR+S I AH C VK GD V I +CR LS Sbjct: 2 VGINVKQPEKECH----DPNCPFHGELSVRGQVIEGTVTSDKADRTITVERSFYKYINKFERYEKRNSKIKAHKPDCLDVKVGDSVKIAECRQLS 92
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_SULTO (30S ribosomal protein S17P OS=Sulfolobus tokodaii GN=rps17p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.954e-16 Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 1 Query: 190 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 K+IG+ G P + + D CPF G + +RG IL G + +T +V R+YL + KY+RYE+R S I HI PC VKEGD+VII +CRP++ Sbjct: 12 KNIGIEGVNPPSKTCD----DINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIA 105
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_SULAC (30S ribosomal protein S17P OS=Sulfolobus acidocaldarius GN=rps17p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.858e-16 Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 Query: 190 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480 K++G+ G P + + Y CP+ G++ +RG +L G A+ NRT V R Y+ + KY+RYE+R S I HI C VKEGD+VIIG+ RP++ Sbjct: 9 KNVGIEGVSAPSKTCDDEY----CPYHGSLKVRGIVLEGKLIRARANRTGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIA 102 The following BLAST results are available for this feature:
BLAST of CF504141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504141 ID=CF504141; Name=CF504141; organism=Citrus sinensis; type=EST; length=481bpback to top |