CF504141

Overview
NameCF504141
Unique NameCF504141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:9..489. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_HALSA (30S ribosomal protein S17P OS=Halobacterium salinarium GN=rps17p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.031e-18
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            +IGL    P    EGT  D+ CPF G +S+RG++L G   S  M +T++V R Y  FV KY RY KR S +PAH   CF +  GD V I + RPLS
Sbjct:    2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLS 93          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_HALS3 (30S ribosomal protein S17P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps17p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.031e-18
Identity = 45/96 (46.88%), Postives = 57/96 (59.38%), Query Frame = 1
Query:  193 SIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            +IGL    P    EGT  D+ CPF G +S+RG++L G   S  M +T++V R Y  FV KY RY KR S +PAH   CF +  GD V I + RPLS
Sbjct:    2 AIGLNVTEP----EGTCSDEDCPFHGNLSVRGQVLEGEVASTDMEKTVVVEREYDVFVPKYDRYMKRRSRVPAHAPECFDISVGDTVSIAETRPLS 93          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METBU (30S ribosomal protein S17P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps17p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.566e-17
Identity = 45/97 (46.39%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            K IGL    P +  +    D  CPF G + +RG+I  GT  SAKM+RT+++++     + KYQRYEKR S I AH  PC   K GD V I +CRPLS
Sbjct:    3 KDIGLDIPEPTKECD----DINCPFHGELPVRGQIHVGTVVSAKMDRTVVIQQRREKLINKYQRYEKRQSKIHAHNPPCIDAKVGDIVTIAECRPLS 95          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PYRHO (30S ribosomal protein S17P OS=Pyrococcus horikoshii GN=rps17p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y H++KKY+RYE R S I AH  PC   K GD V+I + RPLS
Sbjct:    6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVISDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLS 98          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_PYRAB (30S ribosomal protein S17P OS=Pyrococcus abyssi GN=rps17p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.557e-17
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  190 KSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            + IGL  + P E  +    D KCP+ G + I GR+  G   S K  +T+ V R Y H++KKY+RYE R S I AH  PC   K GD V+I + RPLS
Sbjct:    6 RDIGLRIQPPAEKCD----DPKCPWHGHLKIHGRVFEGIVVSDKPRKTVTVERQYYHYLKKYERYELRRSRIHAHNPPCINAKVGDRVLIAETRPLS 98          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_SULSO (30S ribosomal protein S17P OS=Sulfolobus solfataricus GN=rps17p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.015e-16
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  247 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            D+ CP+ G++ +RG  L G     +  +  ++ R YL++  KY+RYE+R S I AH+ PC  V+EGD VIIG+CRPLS
Sbjct:   25 DEDCPYHGSLRVRGITLEGVIVKYRGTKAAVIERQYLYYDSKYKRYERRRSRIHAHVPPCINVREGDKVIIGECRPLS 102          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METTH (30S ribosomal protein S17P OS=Methanobacterium thermoautotrophicum GN=rps17p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  247 DKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            D  CPF G + +RG+IL GT  S K  RT+ V R++  F++KY+RYEKR S I AH   C  V+ GD V I +CRPLS
Sbjct:   15 DPNCPFHGDLPLRGQILEGTVVSDKAERTVTVERSFYKFIRKYERYEKRKSKIKAHKPDCIDVRVGDTVKIAECRPLS 92          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_METST (30S ribosomal protein S17P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps17p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.732e-16
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  196 IGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            +G+  K P +       D  CPF G +S+RG+++ GT  S K +RTI V R++  ++ K++RYEKR+S I AH   C  VK GD V I +CR LS
Sbjct:    2 VGINVKQPEKECH----DPNCPFHGELSVRGQVIEGTVTSDKADRTITVERSFYKYINKFERYEKRNSKIKAHKPDCLDVKVGDSVKIAECRQLS 92          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_SULTO (30S ribosomal protein S17P OS=Sulfolobus tokodaii GN=rps17p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.954e-16
Identity = 43/98 (43.88%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  190 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            K+IG+ G   P +  +    D  CPF G + +RG IL G     +  +T +V R+YL +  KY+RYE+R S I  HI PC  VKEGD+VII +CRP++
Sbjct:   12 KNIGIEGVNPPSKTCD----DINCPFHGNLRVRGIILEGRLIRYRAEKTGVVERDYLFYDTKYKRYERRRSRIHVHIPPCLDVKEGDNVIIAECRPIA 105          
BLAST of CF504141 vs. ExPASy Swiss-Prot
Match: RS17_SULAC (30S ribosomal protein S17P OS=Sulfolobus acidocaldarius GN=rps17p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.858e-16
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1
Query:  190 KSIGL-GFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLS 480
            K++G+ G   P +  +  Y    CP+ G++ +RG +L G    A+ NRT  V R Y+ +  KY+RYE+R S I  HI  C  VKEGD+VIIG+ RP++
Sbjct:    9 KNVGIEGVSAPSKTCDDEY----CPYHGSLKVRGIVLEGKLIRARANRTGTVEREYIFYDSKYKRYERRRSRIHVHIPSCLEVKEGDNVIIGESRPIA 102          
The following BLAST results are available for this feature:
BLAST of CF504141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RS17_HALSA7.031e-1846.8830S ribosomal protein S17P OS=Halobacterium salina... [more]
RS17_HALS37.031e-1846.8830S ribosomal protein S17P OS=Halobacterium salina... [more]
RS17_METBU1.566e-1746.3930S ribosomal protein S17P OS=Methanococcoides bur... [more]
RS17_PYRHO4.557e-1744.3330S ribosomal protein S17P OS=Pyrococcus horikoshi... [more]
RS17_PYRAB4.557e-1744.3330S ribosomal protein S17P OS=Pyrococcus abyssi GN... [more]
RS17_SULSO1.015e-1646.1530S ribosomal protein S17P OS=Sulfolobus solfatari... [more]
RS17_METTH1.732e-1651.2830S ribosomal protein S17P OS=Methanobacterium the... [more]
RS17_METST1.732e-1643.1630S ribosomal protein S17P OS=Methanosphaera stadt... [more]
RS17_SULTO2.954e-1643.8830S ribosomal protein S17P OS=Sulfolobus tokodaii ... [more]
RS17_SULAC3.858e-1641.8430S ribosomal protein S17P OS=Sulfolobus acidocald... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-629 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504141 ID=CF504141; Name=CF504141; organism=Citrus sinensis; type=EST; length=481bp
ATTTAGGGTTTTCTGCATTGTGTTATCCACCTCCGCCCAGTGCGTTCATC
ATCCTCAACAACTCAGCCCCGAAATCCAGCCATGGCGGAGCAGACCGAGA
AGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGCTCGAAGAAGGCAGGA
AAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGG
CTTGGGATTCAAGACTCCCAGAGAGGCAATTGAAGGGACTTACATTGATA
AGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCT
GGTACTTGCCACAGTGCTAAGATGAACAGAACCATCATCGTTAGGCGTAA
CTACCTTCACTTTGTGAAGAAATATCAGAGGTATGAGAAGAGGCACTCTA
ACATTCCAGCACACATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCAT
GTTATCATTGGCCAGTGCAGGCCTTTGTCAA
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