CF504144
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_PIG (Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa GN=U2AF1 PE=3 SV=3) HSP 1 Score: 87.8113 bits (216), Expect = 1.822e-17 Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF4_HUMAN (Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 6.923e-17 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TEKD+VNC FYFKIG CRHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H++ F Sbjct: 11 TEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDSF 81
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 2.014e-16 Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA--LDPRKIQDHFEDF 215 TEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL N+Y P D + ++Q+H+++F Sbjct: 11 TEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNF 83
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 4.962e-15 Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 3 Query: 3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215 TE+D+VNC FY+KIGACRHG+RCSR H KP+ S T+L NMY+ P +P G+ R++ + F+ F Sbjct: 11 TEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIH-----EPNGKKFTQRELAEQFDAF 76
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFM_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.677e-11 Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 3 Query: 6 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMY 128 EKDR NCPFY K GACR GDRCSR H P+ SPTLL+ +M+ Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMF 206
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFL_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.677e-11 Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 3 Query: 6 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMY 128 EKDR NCPFY K GACR GDRCSR H P+ SPTLL+ +M+ Sbjct: 171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMF 211
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFM_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.414e-11 Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 3 Query: 6 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMY 128 EKDR NCPFY K GACR GDRCSR H P+ SPTLL+ M+ Sbjct: 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMF 210 The following BLAST results are available for this feature:
BLAST of CF504144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504144 ID=CF504144; Name=CF504144; organism=Citrus sinensis; type=EST; length=215bpback to top |