CF504144

Overview
NameCF504144
Unique NameCF504144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length215
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8233 contig Csv1_Contig8233:98..312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_PIG (Splicing factor U2AF 35 kDa subunit (Fragment) OS=Sus scrofa GN=U2AF1 PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.822e-17
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215
            TEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H+++F
Sbjct:   11 TEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNF 81          
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF4_HUMAN (Splicing factor U2AF 26 kDa subunit OS=Homo sapiens GN=U2AF1L4 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.923e-17
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3
Query:    3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215
            TEKD+VNC FYFKIG CRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H++ F
Sbjct:   11 TEKDKVNCSFYFKIGVCRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDSF 81          
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.014e-16
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query:    3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA--LDPRKIQDHFEDF 215
            TEKD+VNC FYFKIGACRHGDRCSR+H KP+ S T+LL N+Y  P       D       +   ++Q+H+++F
Sbjct:   11 TEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNF 83          
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.962e-15
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 3
Query:    3 TEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHFEDF 215
            TE+D+VNC FY+KIGACRHG+RCSR H KP+ S T+L  NMY+ P       +P G+    R++ + F+ F
Sbjct:   11 TEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIH-----EPNGKKFTQRELAEQFDAF 76          
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFM_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.677e-11
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 3
Query:    6 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMY 128
            EKDR NCPFY K GACR GDRCSR H  P+ SPTLL+ +M+
Sbjct:  166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMF 206          
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFL_HUMAN (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 OS=Homo sapiens GN=ZRSR1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.677e-11
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 3
Query:    6 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMY 128
            EKDR NCPFY K GACR GDRCSR H  P+ SPTLL+ +M+
Sbjct:  171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMF 211          
BLAST of CF504144 vs. ExPASy Swiss-Prot
Match: U2AFM_MOUSE (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Mus musculus GN=Zrsr2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.414e-11
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 3
Query:    6 EKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMY 128
            EKDR NCPFY K GACR GDRCSR H  P+ SPTLL+  M+
Sbjct:  170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMF 210          
The following BLAST results are available for this feature:
BLAST of CF504144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
U2AF1_PIG1.822e-1752.11Splicing factor U2AF 35 kDa subunit (Fragment) OS=... [more]
U2AF4_HUMAN6.923e-1750.70Splicing factor U2AF 26 kDa subunit OS=Homo sapien... [more]
U2AF1_DROME2.014e-1650.68Splicing factor U2af 38 kDa subunit OS=Drosophila ... [more]
U2AF1_SCHPO4.962e-1549.30Splicing factor U2AF 23 kDa subunit OS=Schizosacch... [more]
U2AFM_HUMAN5.677e-1168.29U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFL_HUMAN5.677e-1168.29U2 small nuclear ribonucleoprotein auxiliary facto... [more]
U2AFM_MOUSE7.414e-1168.29U2 small nuclear ribonucleoprotein auxiliary facto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-632 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504144 ID=CF504144; Name=CF504144; organism=Citrus sinensis; type=EST; length=215bp
GAACCGAAAAGGACAGAGTAAACTGTCCGTTCTATTTCAAGATCGGCGCG
TGCAGGCACGGCGATCGATGCTCTCGGCTTCATACGAAGCCCAGCATCAG
CCCCACACTCCTCCTCTCCAACATGTACCAACGCCCCGACATGATCACTC
CCGGCGTTGACCCGCAGGGCCAGGCCCTTGACCCTCGCAAGATCCAAGAT
CACTTCGAGGATTTT
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