CF504151

Overview
NameCF504151
Unique NameCF504151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_ASHGO (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya gossypii GN=IMP4 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = 2 
Query:   71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421
            MLRR  R RREYLYRK+ E +E  L +K+  IK+AL +GKP+P E+ ++    R   D + + +A  +  IDDEY A +   DPK+++TTSRDPS  L+QF KE+K +FP + R+NRG
Sbjct:    1 MLRRQARERREYLYRKAQELQESQLQQKRDLIKQALAQGKPLPKEVADDTKLQR---DYQYDESA--QESIDDEYSALSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRG 113
[Close]
BLAST of CF504151 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.945e-19
Identity = 46/119 (38.66%), Postives = 82/119 (68.91%), Query Frame = 2 
Query:   71 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRS--HIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRG 421
            MLRR +R RR+++Y+++ E +E  L EK+R +++AL+  K +  +L+ E++ L+++   ++       +  ++DDEY    ER+PK+L+TTSR+PS+ L QF KE++ + PN+ R+NRG
Sbjct:    1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQ-EDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118
The following BLAST results are available for this feature:
BLAST of CF504151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
IMP4_ASHGO2.714e-2148.31U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_SCHPO1.945e-1938.66U3 small nucleolar ribonucleoprotein protein imp4 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-639 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-14_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504151 ID=CF504151; Name=CF504151; organism=Citrus sinensis; type=EST; length=423bp
GCTCGCATAAACCTCGACAACACTTAATAGCTCTTCATAAAATTTAGGTC
TTTATCCAAATTCCCCAACGATGTTGCGTCGGAATATTCGATTGAGACGG
GAATACTTATATAGAAAGAGCTTAGAAGGCAAAGAACGCTTGCTCTATGA
GAAGAAGCGCAAAATCAAGGAAGCCTTGCAAGAGGGAAAGCCGATTCCCA
CTGAGCTGAGGAACGAGGAGGCTGCGCTTCGCCAAGAAATTGATCTTGAA
GATGAAAATACAGCTATCCCAAGGAGCCACATTGATGATGAATATGCAAA
TGCGACTGAAAGAGATCCTAAAATTTTGCTGACTACATCAAGGGATCCGA
GTGCTCCTCTTACACAGTTTGTAAAGGAGTTGAAGTTTGTCTTTCCTAAT
GCACAAAGAATGAATCGTGGTGG
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