CF504285 | Citrus Genome Database

Overview


Name	CF504285
Unique Name	CF504285
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	390

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12594	contig	Csv1_Contig12594:72..460.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_CATRO (S-adenosylmethionine synthetase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.130e-36
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCRSIGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFVSDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.130e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.472e-36
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLAQDP+SKVACETC+KTNMVMVFGEITTKA+VDYEKIVRDTCR IGFTS DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLAQDPESKVACETCSKTNMVMVFGEITTKADVDYEKIVRDTCRGIGFTSDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.472e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.472e-36
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCRSIGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.472e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.472e-36
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCRSIGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.472e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.472e-36
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCRSIGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.472e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.472e-36
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCRSIGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.472e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.918e-36
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDA+LDACL QDP+SKVACETCTKTNMVM+FGEITTKAN+DYEKIVRDTCR IGF SADVGLDA
Sbjct:   17 DKLCDQISDAILDACLEQDPESKVACETCTKTNMVMIFGEITTKANIDYEKIVRDTCRGIGFVSADVGLDA 87

HSP 2 Score: 33.4982 bits (75), Expect = 1.918e-36
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            M+TFLFTSESVNEGH
Sbjct:    1 MDTFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_CATRO (S-adenosylmethionine synthetase 2 OS=Catharanthus roseus GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.918e-36
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLAQDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR+IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLAQDPESKVACETCTKTNMVMVFGEITTKAQVDYEKIVRDTCRAIGFVSDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.918e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.918e-36
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA +DYEKIVRDTCRSIGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATIDYEKIVRDTCRSIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.918e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.918e-36
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQVSDA+LDACL QDP+SKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGF SADVGLDA
Sbjct:   17 DKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSADVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.918e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

The following BLAST results are available for this feature:

BLAST of CF504285 vs. ExPASy Swiss-Prot

BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK1_CATRO	1.130e-36	92.96	S-adenosylmethionine synthetase 1 OS=Catharanthus ...	[more]
METK_GOSHI	1.472e-36	91.55	S-adenosylmethionine synthetase OS=Gossypium hirsu...	[more]
METK_BRARP	1.472e-36	92.96	S-adenosylmethionine synthetase OS=Brassica rapa s...	[more]
METK5_BRAJU	1.472e-36	92.96	S-adenosylmethionine synthetase 5 OS=Brassica junc...	[more]
METK3_BRAJU	1.472e-36	92.96	S-adenosylmethionine synthetase 3 OS=Brassica junc...	[more]
METK1_BRAJU	1.472e-36	92.96	S-adenosylmethionine synthetase 1 OS=Brassica junc...	[more]
METK1_PICSI	1.918e-36	88.73	S-adenosylmethionine synthetase 1 OS=Picea sitchen...	[more]
METK2_CATRO	1.918e-36	91.55	S-adenosylmethionine synthetase 2 OS=Catharanthus ...	[more]
METK2_ARATH	1.918e-36	91.55	S-adenosylmethionine synthetase 2 OS=Arabidopsis t...	[more]
METK3_SOLLC	1.918e-36	91.55	S-adenosylmethionine synthetase 3 OS=Solanum lycop...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT