CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12594 contig Csv1_Contig12594:72..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.525e-36
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDP+SKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCR+IGF S DVGLDA
Sbjct:   19 DKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRNIGFVSDDVGLDA 89

HSP 2 Score: 32.7278 bits (73), Expect = 5.525e-36
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 3 
Query:  132 ETFLFTSESVNEGH 173
            ETFLFTSESVNEGH
Sbjct:    4 ETFLFTSESVNEGH 17
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.192e-36
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLAQDP+SKVACETCTKTN+VMVFGEITTKANVDYEKIVR TCR IGF SADVGLDA
Sbjct:   21 DKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDA 91

HSP 2 Score: 31.9574 bits (71), Expect = 7.192e-36
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            ++TFLFTSESVNEGH
Sbjct:    5 VDTFLFTSESVNEGH 19
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.192e-36
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLA+DP+SKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCR IGF S DVGLDA
Sbjct:   20 DKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDA 90

HSP 2 Score: 31.9574 bits (71), Expect = 7.192e-36
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            ++TFLFTSESVNEGH
Sbjct:    4 VDTFLFTSESVNEGH 18
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.192e-36
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLAQDP+SKVACETCTKTN+VMVFGEITTKANVDYEKIVR TCR IGF SADVGLDA
Sbjct:   21 DKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDA 91

HSP 2 Score: 31.9574 bits (71), Expect = 7.192e-36
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            ++TFLFTSESVNEGH
Sbjct:    5 VDTFLFTSESVNEGH 19
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 7.192e-36
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLAQDP+SKVACETCTKTN+VMVFGEITTKANVDYEKIVR TCR IGF SADVGLDA
Sbjct:   21 DKLCDQISDAVLDACLAQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRQTCRDIGFVSADVGLDA 91

HSP 2 Score: 31.9574 bits (71), Expect = 7.192e-36
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            ++TFLFTSESVNEGH
Sbjct:    5 VDTFLFTSESVNEGH 19
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.193e-36
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTN+VM+FGEITTKAN+DYEKIVRDTCR++GF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMIFGEITTKANLDYEKIVRDTCRAVGFVSEDVGLDA 87

HSP 2 Score: 33.4982 bits (75), Expect = 7.193e-36
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            M+TFLFTSESVNEGH
Sbjct:    1 MDTFLFTSESVNEGH 15
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.194e-36
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQVSDA+LDACL QDP+SKVACETCTKTNMVMVFGEITTKA V+YEKIVRDTCR IGFTS DVGLDA
Sbjct:   17 DKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKATVNYEKIVRDTCRGIGFTSPDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 7.194e-36
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.220e-35
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTK  +DYEKIVRDTCR+IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKGKIDYEKIVRDTCRNIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 1.220e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.221e-35
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQVSDA+LDACL QDP+SKVACETC+KTNMVMVFGEITTKA VDYEKIVRDTCR IGF SADVGLDA
Sbjct:   17 DKLCDQVSDAILDACLEQDPESKVACETCSKTNMVMVFGEITTKAKVDYEKIVRDTCRGIGFVSADVGLDA 87

HSP 2 Score: 33.4982 bits (75), Expect = 1.221e-35
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3 
Query:  129 METFLFTSESVNEGH 173
            M+TFLFTSESVNEGH
Sbjct:    1 MDTFLFTSESVNEGH 15
[Close]
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.590e-35
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 1 
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVR+TCR+IGF S DVGLDA
Sbjct:   19 DKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDA 89

HSP 2 Score: 31.5722 bits (70), Expect = 1.590e-35
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3 
Query:  132 ETFLFTSESVNEGH 173
            ETFL+TSESVNEGH
Sbjct:    4 ETFLYTSESVNEGH 17
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_PEA5.525e-3691.55S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK4_ATRNU7.192e-3691.55S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK3_ORYSJ7.192e-3691.55S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK3_ATRNU7.192e-3691.55S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK1_ATRNU7.192e-3691.55S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK4_VITVI7.193e-3687.32S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK3_CATRO7.194e-3690.14S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK1_POPTR1.220e-3588.73S-adenosylmethionine synthetase 1 OS=Populus trich... [more]
METK3_VITVI1.221e-3590.14S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK_MEDFA1.590e-3591.55S-adenosylmethionine synthetase OS=Medicago falcat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
back to top