CF504285 | Citrus Genome Database

Overview


Name	CF504285
Unique Name	CF504285
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	390

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12594	contig	Csv1_Contig12594:72..460.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.513e-35
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDP+SKVACETCTKTN+VMVFGEITTKA VDYEKIVRDTCR+IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 3.513e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.513e-35
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QD DSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR+IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDQDSKVACETCTKTNMVMVFGEITTKAAVDYEKIVRDTCRTIGFVSDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 3.513e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.513e-35
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDP+SKVACETCTKTN+VMVFGEITTKA VDYEKIVRDTCR+IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 3.513e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.513e-35
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDP+SKVACETCTKTN+VMVFGEITTKA VDYEKIVRDTCR+IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKAIVDYEKIVRDTCRNIGFVSDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 3.513e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.576e-35
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA+VDYE+IVR TCR IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 4.576e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.576e-35
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLAQD +SKVACETCTKTN+VMVFGEITTKANVDYEKI RDTCR+IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLAQDAESKVACETCTKTNLVMVFGEITTKANVDYEKIARDTCRNIGFVSDDVGLDA 87

HSP 2 Score: 33.4982 bits (75), Expect = 4.576e-35
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            M+TFLFTSESVNEGH
Sbjct:    1 MDTFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.576e-35
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA+VDYE+IVR TCR IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLTQDPDSKVACETCTKTNMVMVFGEITTKADVDYEQIVRKTCREIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 4.576e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.577e-35
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQVSDA+LDACL QDP+SKVACE+CTKTNMVMVFGEITTKA V+YEKIVRDTCR IGFTS DVGLDA
Sbjct:   17 DKLCDQVSDAILDACLKQDPESKVACESCTKTNMVMVFGEITTKAQVNYEKIVRDTCRGIGFTSPDVGLDA 87

HSP 2 Score: 33.4982 bits (75), Expect = 4.577e-35
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            M+TFLFTSESVNEGH
Sbjct:    1 MDTFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.577e-35
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQVSDA+LDACL QDP+SKVACETCTKTNMVMVFGEITT A VDYEKIVR TCR IGF SADVGLDA
Sbjct:   17 DKLCDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTSAKVDYEKIVRSTCREIGFISADVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 4.577e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

[Close]

BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_PICSI (S-adenosylmethionine synthetase 2 OS=Picea sitchensis GN=METK2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.764e-35
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 1

Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA++DYE+IVR TCR IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLIQDPDSKVACETCTKTNMVMVFGEITTKADIDYEQIVRKTCREIGFISDDVGLDA 87

HSP 2 Score: 34.6538 bits (78), Expect = 7.764e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3

Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15

The following BLAST results are available for this feature:

BLAST of CF504285 vs. ExPASy Swiss-Prot

BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
METK_SOLBR	3.513e-35	88.73	S-adenosylmethionine synthetase OS=Solanum brevide...	[more]
METK_CAMSI	3.513e-35	90.14	S-adenosylmethionine synthetase OS=Camellia sinens...	[more]
METK1_SOLTU	3.513e-35	88.73	S-adenosylmethionine synthetase 1 OS=Solanum tuber...	[more]
METK1_SOLLC	3.513e-35	88.73	S-adenosylmethionine synthetase 1 OS=Solanum lycop...	[more]
METK3_PICSI	4.576e-35	88.73	S-adenosylmethionine synthetase 3 OS=Picea sitchen...	[more]
METK_MESCR	4.576e-35	88.73	S-adenosylmethionine synthetase OS=Mesembryanthemu...	[more]
METK2_PINCO	4.576e-35	88.73	S-adenosylmethionine synthetase 2 OS=Pinus contort...	[more]
METK1_ACTCH	4.577e-35	88.73	S-adenosylmethionine synthetase 1 OS=Actinidia chi...	[more]
METK4_BRAJU	4.577e-35	88.73	S-adenosylmethionine synthetase 4 OS=Brassica junc...	[more]
METK2_PICSI	7.764e-35	87.32	S-adenosylmethionine synthetase 2 OS=Picea sitchen...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT