CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12594 contig Csv1_Contig12594:72..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 7.765e-35
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDA+LDACL QDP+SKVACETCTKTNMVMVFGEITT A VDYEKIVR TCR IGF SADVGLDA
Sbjct:   17 DKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDA 87          

HSP 2 Score: 34.6538 bits (78), Expect = 7.765e-35
Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            METFLFTSESVNEGH
Sbjct:    1 METFLFTSESVNEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.231e-34
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETC+KTNMVMVFGEITTKANVDYEKIV  TCR IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVHKTCRDIGFVSDDVGLDA 87          

HSP 2 Score: 32.3426 bits (72), Expect = 2.231e-34
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M+TFL+TSESVNEGH
Sbjct:    1 MDTFLYTSESVNEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.910e-34
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACLAQD +SKVACETCTKTN+VMVFGEITTKANVDYEKIV DTCR IGF S DVGLDA
Sbjct:   21 DKLCDQISDAVLDACLAQDAESKVACETCTKTNLVMVFGEITTKANVDYEKIVADTCREIGFVSPDVGLDA 91          

HSP 2 Score: 31.5722 bits (70), Expect = 2.910e-34
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            +TFLFTSESVNEGH
Sbjct:    6 DTFLFTSESVNEGH 19          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.911e-34
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQ+SDAVLDACL QDPDSKVACETC+KTNMVMVFGEITTKANVDYEKIVR TCR IGF S DVGLDA
Sbjct:   17 DKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVRKTCRDIGFVSDDVGLDA 87          

HSP 2 Score: 30.0314 bits (66), Expect = 2.911e-34
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M+TFL TSESVNEGH
Sbjct:    1 MDTFLNTSESVNEGH 15          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.421e-33
Identity = 64/71 (90.14%), Postives = 65/71 (91.55%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DKLCDQVSDAVLDACLAQD DSKVACET TKTNMVMV GEITTKA VDYEKIVRDTCR+IGF S DVGLDA
Sbjct:   19 DKLCDQVSDAVLDACLAQDADSKVACETVTKTNMVMVLGEITTKATVDYEKIVRDTCRNIGFISDDVGLDA 89          

HSP 2 Score: 32.7278 bits (73), Expect = 1.421e-33
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            ETFLFTSESVNEGH
Sbjct:    4 ETFLFTSESVNEGH 17          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.472e-32
Identity = 60/71 (84.51%), Postives = 62/71 (87.32%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+CDQVSDAVLDACL QDPDSKVACETC KT MVMVFGEITTKA VDYE IVR  C+ IGFTS DVGLDA
Sbjct:   20 DKICDQVSDAVLDACLEQDPDSKVACETCCKTGMVMVFGEITTKAKVDYEAIVRKVCKEIGFTSEDVGLDA 90          

HSP 2 Score: 30.8018 bits (68), Expect = 7.472e-32
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            +E+FL+TSESVNEGH
Sbjct:    4 LESFLYTSESVNEGH 18          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.308e-29
Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DKL DQ+SD +LDACLAQDPDSKVACET TKTNMVMVFGEITTKA VDYE +VR  CR +GF S + GLD
Sbjct:   16 DKLADQISDGILDACLAQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISDETGLD 85          

HSP 2 Score: 28.8758 bits (63), Expect = 9.308e-29
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            FLFTSESVNEGH
Sbjct:    3 FLFTSESVNEGH 14          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.482e-28
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DKL DQ+SD +LDACL QDPDSKVACET TKTNMVMVFGEITTKA VDYE +VR  CR +GF S + GLD
Sbjct:   16 DKLADQISDGILDACLEQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISNETGLD 85          

HSP 2 Score: 28.8758 bits (63), Expect = 3.482e-28
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 3
Query:  138 FLFTSESVNEGH 173
            FLFTSESVNEGH
Sbjct:    3 FLFTSESVNEGH 14          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_YEAST (S-adenosylmethionine synthetase 1 OS=Saccharomyces cerevisiae GN=SAM1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.796e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQVSDA+LDACLA+DP SKVACET  KT M+MVFGEITTKA +DY+KIVRDT + IG+  +  G D
Sbjct:   18 DKICDQVSDAILDACLAEDPHSKVACETAAKTGMIMVFGEITTKAQLDYQKIVRDTIKKIGYDDSAKGFD 87          

HSP 2 Score: 28.4906 bits (62), Expect = 6.796e-26
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  135 TFLFTSESVNEGH 173
            TFLFTSESV EGH
Sbjct:    4 TFLFTSESVGEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 8.846e-26
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQVSDAVLDACLAQDP SKVACET TKT MVM+ GEITTKANVDY+K+VR+  + IG+  +  G D
Sbjct:   17 DKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMILGEITTKANVDYQKVVREAVKKIGYDDSSKGFD 86          

HSP 2 Score: 27.7202 bits (60), Expect = 8.846e-26
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            M ++LFTSESV EGH
Sbjct:    1 MSSYLFTSESVTEGH 15          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_ARATH7.765e-3587.32S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK1_DAUCA2.231e-3488.73S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK2_DIACA2.910e-3488.73S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK2_DAUCA2.911e-3490.14S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK3_HORVU1.421e-3390.14S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_CHLRE7.472e-3284.51S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTLU9.308e-2977.14S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]
METK_OSTTA3.482e-2875.71S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK1_YEAST6.796e-2670.00S-adenosylmethionine synthetase 1 OS=Saccharomyces... [more]
METK_DICDI8.846e-2671.43S-adenosylmethionine synthetase OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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