CF504285

Overview
NameCF504285
Unique NameCF504285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length390
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12594 contig Csv1_Contig12594:72..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.400e-25
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DKLCDQVSDAVLDACLA DP SKVACE+C KT MVMVFGEITTKA +DY+KIVR+T + IGF SAD GLD
Sbjct:   19 DKLCDQVSDAVLDACLAGDPFSKVACESCAKTGMVMVFGEITTKAVLDYQKIVRNTIKDIGFDSADKGLD 88          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK2_YEAST (S-adenosylmethionine synthetase 2 OS=Saccharomyces cerevisiae GN=SAM2 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.300e-25
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQVSDA+LDACL QDP SKVACET  KT M+MVFGEITTKA +DY++IVRDT + IG+  +  G D
Sbjct:   20 DKICDQVSDAILDACLEQDPFSKVACETAAKTGMIMVFGEITTKARLDYQQIVRDTIKKIGYDDSAKGFD 89          

HSP 2 Score: 28.8758 bits (63), Expect = 4.300e-25
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            +TFLFTSESV EGH
Sbjct:    5 KTFLFTSESVGEGH 18          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.320e-25
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:  211 LDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            +DACL QD DSKVACETCTKTN+VMVFGEITTKANVDYEKIVR+TCR+IGF SADVGLDA
Sbjct:    3 VDACLEQDSDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRNTCRNIGFVSADVGLDA 62          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.283e-25
Identity = 44/70 (62.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+CDQ+SDA+LDACL  DP SKVACET +KT MVMVFGEITT++ +DY+K++R+T +SIG+  ++ G D
Sbjct:   18 DKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFD 87          

HSP 2 Score: 29.261 bits (64), Expect = 7.283e-25
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            +TFLFTSESV EGH
Sbjct:    3 QTFLFTSESVGEGH 16          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.476e-25
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DKLCDQVSDA+LDACLA DP SKVACET +KT MVMVFGEITTK++ DY+K++R+T + IGFT + +G D
Sbjct:   20 DKLCDQVSDAILDACLANDPYSKVACETASKTGMVMVFGEITTKSSFDYQKVIRETVKRIGFTDSSIGFD 89          

HSP 2 Score: 22.7126 bits (47), Expect = 9.476e-25
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  132 ETFLFTSESVNEGH 173
            +T LFTSE V+E H
Sbjct:    5 KTLLFTSECVSESH 18          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_BRAHW (S-adenosylmethionine synthetase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=metK PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.504e-24
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1
Query:  133 KHFFSHQNQ*TRVTSDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            K+++      T    DK+CD VSDAVLD CL QDP+S+VACET  KT M+M+ GEITTKA +DY+KI RDT R IG+TS+D+G DA
Sbjct:    5 KNYYFSSESVTEGHPDKICDAVSDAVLDECLKQDPNSRVACETLAKTGMIMIAGEITTKAKLDYQKIARDTVRRIGYTSSDMGFDA 90          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.602e-24
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDA+LDACLA+DP SKVACET TKT M+MVFGEITTKA +DY+K+VR+  + IG+  +  G D
Sbjct:   30 DKIADQVSDAILDACLAEDPLSKVACETATKTGMIMVFGEITTKAKLDYQKVVRNAIKDIGYDDSSKGFD 99          

HSP 2 Score: 28.4906 bits (62), Expect = 4.602e-24
Identity = 12/13 (92.31%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  135 TFLFTSESVNEGH 173
            TFLFTSESV EGH
Sbjct:   16 TFLFTSESVGEGH 28          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.320e-23
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLD 387
            DK+ DQVSDAVLDACLA+DP SKVACET TKT M+MVFGEITTKA++DY+KI+R+  + IG+  +  G D
Sbjct:   27 DKIADQVSDAVLDACLAEDPLSKVACETATKTGMIMVFGEITTKAHLDYQKIIRNAVKDIGYDDSAKGFD 96          

HSP 2 Score: 26.9498 bits (58), Expect = 1.320e-23
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  135 TFLFTSESVNEGH 173
            +FLFTSESV EGH
Sbjct:   13 SFLFTSESVGEGH 25          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.504e-23
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1
Query:  229 QDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            QDPDSKVACETCTKTNMVMVFGEITTK N+DYEKIVRDTCR+IGF S DVGLDA
Sbjct:    1 QDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRNIGFVSDDVGLDA 54          
BLAST of CF504285 vs. ExPASy Swiss-Prot
Match: METK_ANASK (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain K) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.389e-22
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  178 DKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDA 390
            DK+ DQ+SDAVLDA L QDP  +VACET  KT  VM+ GEITTKA +DY K+ R+T R IG+TS D+G DA
Sbjct:   19 DKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDA 89          

HSP 2 Score: 27.7202 bits (60), Expect = 2.389e-22
Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 3
Query:  129 METFLFTSESVNEGH 173
            ++ FLFTSESV EGH
Sbjct:    3 LQDFLFTSESVTEGH 17          
The following BLAST results are available for this feature:
BLAST of CF504285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LEIIN1.400e-2580.00S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK2_YEAST4.300e-2568.57S-adenosylmethionine synthetase 2 OS=Saccharomyces... [more]
METK1_PEA5.320e-2588.33S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK_SCHPO7.283e-2562.86S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK_ACACA9.476e-2570.00S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK_BRAHW4.504e-2459.30S-adenosylmethionine synthetase OS=Brachyspira hyo... [more]
METK_NEUCR4.602e-2465.71S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK_ASCIM1.320e-2367.14S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK3_ACTCH6.504e-2390.74S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]
METK_ANASK2.389e-2263.38S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-774 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504285 ID=CF504285; Name=CF504285; organism=Citrus sinensis; type=EST; length=390bp
CGTCTTTCTCTCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACC
TTCAATTCCATTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGC
AGCTTCAGGTTAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACAT
CAGAATCAGTGAACGAGGGTCACCTCGGACAAGCTGTGTGACCAAGTTTC
GGACGCAGTACTGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTG
CTTGTGAAACATGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATT
ACAACCAAGGCCAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAG
ATCGATTGGGTTCACATCGGCCGATGTGGGGCTTGATGCT
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