CF504286

Overview
NameCF504286
Unique NameCF504286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_THEAQ (Fumarate hydratase class II OS=Thermus aquaticus GN=fumC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.572e-16
Identity = 44/72 (61.11%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL++F IG  R RMP  I+RA+G+LKK AA+ N+E G L   I +AI+QAA+EV  GKL+DHFPLVV+QTG
Sbjct:   27 RSLEHFRIGAWRFRMPLEIIRAYGMLKKAAARANLELGELPEEIARAIIQAAEEVIAGKLDDHFPLVVFQTG 98          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_RICBR (Fumarate hydratase class II OS=Rickettsia bellii (strain RML369-C) GN=fumC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.269e-15
Identity = 39/72 (54.17%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL+NF IG  ++RMPE ++R+  ILKKCAAKVN+E+G L+P I ++I +A   +   + +D+FPLVVWQTG
Sbjct:   28 RSLENFKIG--KQRMPEILIRSLAILKKCAAKVNLEFGDLEPKIAESIDKATSRILNAEFSDNFPLVVWQTG 97          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_RICFE (Fumarate hydratase class II OS=Rickettsia felis GN=fumC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTG
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNYEFGDLEAKIATSIDKATDRILEGEFEDNFPLVVWQTG 97          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_METEA (Fumarate hydratase class II OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=fumC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.471e-14
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS+QNF IG ER+  P P+V A GI+K+ AA VN + G LDP I  AI ++A EV  GK +D FPLVVWQTG
Sbjct:   35 RSIQNFKIGTERQ--PAPLVHALGIVKQAAALVNKDLGGLDPKIADAIAESAAEVVAGKHDDEFPLVVWQTG 104          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_RICCN (Fumarate hydratase class II OS=Rickettsia conorii GN=fumC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.277e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL+NF IG  +++MPE ++RA  ILKKCAA+VN E+G L+  I  +I +A   + EG+  D+FPLVVWQTG
Sbjct:   28 RSLENFKIG--KQKMPEILIRALAILKKCAAQVNHEFGDLEAKIAISIDKATDRILEGEFEDNFPLVVWQTG 97          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC2_PSEAE (Fumarate hydratase class II 2 OS=Pseudomonas aeruginosa GN=fumC2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.774e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL+NF IGG+R  MP  ++ A  ++KK AA+VN   G L P + + I QAA EV  G+ ++HFPLVVWQTG
Sbjct:   26 RSLENFAIGGQR--MPLAVIHALALIKKAAARVNDHLGELPPEVARLIEQAADEVLAGRHDEHFPLVVWQTG 95          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC1_BRAJA (Fumarate hydratase class II 1 OS=Bradyrhizobium japonicum GN=fumC1 PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.732e-13
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS QNF IG   +RMP  +V A GI+K  AA+ N E GL D     AI++AA+EV +G L+DHFPLVVWQTG
Sbjct:   38 RSRQNFRIG--TDRMPISLVHALGIVKLAAAQSNRELGLLDQRRASAIIRAAREVIDGSLDDHFPLVVWQTG 107          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_COXBU (Fumarate hydratase class II OS=Coxiella burnetii GN=fumC PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.180e-13
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL NF IG  RE MP  ++RAFG+LKK A   N+E G +       I++A +E+  GKLNDHFPL +WQTG
Sbjct:   25 RSLINFAIG--RETMPPELIRAFGVLKKAAVLTNVELGKVSQEKANFILKACEELIAGKLNDHFPLKIWQTG 94          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIN (Fumarate hydratase class II OS=Leptospira interrogans GN=fumC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.072e-13
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTG
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_LEPIC (Fumarate hydratase class II OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=fumC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.072e-13
Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL +F IG +R   P  ++RA GILKK AA VN E GL      K I+QAA EV  GKL++HFPL VWQTG
Sbjct:   27 RSLHHFHIGNDR--FPREMIRALGILKKSAAVVNAELGLLSEDKKKLIVQAADEVISGKLDEHFPLSVWQTG 96          
The following BLAST results are available for this feature:
BLAST of CF504286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
FUMC_THEAQ1.572e-1661.11Fumarate hydratase class II OS=Thermus aquaticus G... [more]
FUMC_RICBR2.269e-1554.17Fumarate hydratase class II OS=Rickettsia bellii (... [more]
FUMC_RICFE1.471e-1454.17Fumarate hydratase class II OS=Rickettsia felis GN... [more]
FUMC_METEA1.471e-1458.33Fumarate hydratase class II OS=Methylobacterium ex... [more]
FUMC_RICCN3.277e-1454.17Fumarate hydratase class II OS=Rickettsia conorii ... [more]
FUMC2_PSEAE2.774e-1352.78Fumarate hydratase class II 2 OS=Pseudomonas aerug... [more]
FUMC1_BRAJA4.732e-1356.94Fumarate hydratase class II 1 OS=Bradyrhizobium ja... [more]
FUMC_COXBU6.180e-1352.78Fumarate hydratase class II OS=Coxiella burnetii G... [more]
FUMC_LEPIN8.072e-1356.94Fumarate hydratase class II OS=Leptospira interrog... [more]
FUMC_LEPIC8.072e-1356.94Fumarate hydratase class II OS=Leptospira interrog... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-775 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504286 ID=CF504286; Name=CF504286; organism=Citrus sinensis; type=EST; length=233bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGGGCACTCAGAGTAATATG
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