CF504286

Overview
NameCF504286
Unique NameCF504286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_BACCR (Fumarate hydratase class II OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fumC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.377e-12
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS +NF IG   E+MP  IV+AF ILKK AA  N + G L     +AI++AA EV  GK N+HFPLVVWQTG
Sbjct:   27 RSKENFPIG--TEQMPLEIVKAFAILKKSAALSNQKLGKLSEEKAEAIVEAADEVIAGKWNEHFPLVVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_BORPA (Fumarate hydratase class II OS=Bordetella parapertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.348e-12
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTG
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_BORBR (Fumarate hydratase class II OS=Bordetella bronchiseptica GN=fumC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.348e-12
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTG
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVVAGKWPDEFPLSVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_DEIRA (Fumarate hydratase class II OS=Deinococcus radiodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.067e-12
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS+ NF IG +      P++RA GILKK AA+ N E G  PA +   I++AA EV  GKL++HFPLVV+QTG
Sbjct:   28 RSIHNFPIGRDTFVWGRPVIRALGILKKGAAQANAELGELPADVADLIVKAADEVIAGKLDEHFPLVVFQTG 99          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_BORPE (Fumarate hydratase class II OS=Bordetella pertussis GN=fumC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.067e-12
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL  F I    E+MP P+V A   LK+ AAKVN E G LDP +  AIM+AA EV  GK  D FPL VWQTG
Sbjct:   27 RSLHFFAIS--TEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_RICPR (Fumarate hydratase class II OS=Rickettsia prowazekii GN=fumC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.006e-12
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL NF I   +++MP+ ++RA  ILKKCAA+VN E+G L+  I  +I +A   +  G+  D+FPLVVWQTG
Sbjct:   28 RSLNNFKIS--KQKMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTG 97          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_BACAN (Fumarate hydratase class II OS=Bacillus anthracis GN=fumC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.232e-12
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS +NF IG   E+MP  IV+AF ILKK AA  N + G L     +AI+ AA E+  GK N+HFPLVVWQTG
Sbjct:   27 RSKENFPIG--TEQMPLEIVKAFAILKKSAALSNQKLGKLSEEKAEAIVVAADEIIAGKWNEHFPLVVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_RICTY (Fumarate hydratase class II OS=Rickettsia typhi GN=fumC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.522e-11
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL NF I   +++MP+ ++ A  ILKKCAA+VN E+G L+  I  +I +A   +  G+  D+FPLVVWQTG
Sbjct:   28 RSLNNFKIS--KQKMPKILIHALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTG 97          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_PSEPK (Fumarate hydratase class II OS=Pseudomonas putida (strain KT2440) GN=fumC-2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.988e-11
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL NF IG  +ERMP  ++ A  ++KK AA+VN   G  PA I + I QAA EV +G+ +D FPLVVWQTG
Sbjct:   26 RSLINFAIG--KERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVVWQTG 95          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_OCEIH (Fumarate hydratase class II OS=Oceanobacillus iheyensis GN=fumC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.988e-11
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS QNF IG E+  MP  I++AF ILK+  A+ N E GL +    +AI  AA +V    L DHFPLVVWQTG
Sbjct:   27 RSKQNFPIGNEK--MPVEIIKAFAILKRSTAEANFELGLMERDKMEAIQYAADQVLNDSLTDHFPLVVWQTG 96          
The following BLAST results are available for this feature:
BLAST of CF504286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
FUMC_BACCR1.377e-1256.94Fumarate hydratase class II OS=Bacillus cereus (st... [more]
FUMC_BORPA2.348e-1256.94Fumarate hydratase class II OS=Bordetella parapert... [more]
FUMC_BORBR2.348e-1256.94Fumarate hydratase class II OS=Bordetella bronchis... [more]
FUMC_DEIRA3.067e-1252.78Fumarate hydratase class II OS=Deinococcus radiodu... [more]
FUMC_BORPE3.067e-1256.94Fumarate hydratase class II OS=Bordetella pertussi... [more]
FUMC_RICPR4.006e-1250.00Fumarate hydratase class II OS=Rickettsia prowazek... [more]
FUMC_BACAN5.232e-1255.56Fumarate hydratase class II OS=Bacillus anthracis ... [more]
FUMC_RICTY1.522e-1148.61Fumarate hydratase class II OS=Rickettsia typhi GN... [more]
FUMC_PSEPK1.988e-1154.17Fumarate hydratase class II OS=Pseudomonas putida ... [more]
FUMC_OCEIH1.988e-1152.78Fumarate hydratase class II OS=Oceanobacillus ihey... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-775 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504286 ID=CF504286; Name=CF504286; organism=Citrus sinensis; type=EST; length=233bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGGGCACTCAGAGTAATATG
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