CF504286

Overview
NameCF504286
Unique NameCF504286
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_NITEU (Fumarate hydratase class II OS=Nitrosomonas europaea GN=fumC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.597e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSL NF+I GER  MP  ++ A  ++K+ AA VN + GL D  I +AI+ AA EV  G+    FPLVVWQTG
Sbjct:   28 RSLNNFNISGER--MPSALIHALALVKRAAASVNHDLGLLDENIARAIITAADEVLAGEHAGEFPLVVWQTG 97          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_BACHD (Fumarate hydratase class II OS=Bacillus halodurans GN=fumC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.597e-11
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS +NF IG   E+MP  I+ AF +LKK AA VN + G L      AI  AA EV  GK +DHFPL VWQTG
Sbjct:   27 RSYENFHIG--TEKMPMEIIYAFALLKKAAANVNKKLGQLSAEKADAITWAANEVLAGKHDDHFPLFVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_NEIMA (Fumarate hydratase class II OS=Neisseria meningitidis serogroup A GN=fumC PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.785e-11
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS  NF IGGE   +P+P++ A  ++KK AA  N+  G + P     I QAA +V  GKL+  FPLVVWQTG
Sbjct:   27 RSRNNFKIGGET--LPQPLIYALALVKKAAAATNVSLGRIKPEQADLITQAADDVLNGKLDGQFPLVVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_RALSO (Fumarate hydratase class II OS=Ralstonia solanacearum GN=fumC PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.867e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAI-GKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RSLQNFDI G+R  MP  ++ A   +K+ +A VN   GL PA    A++ AA EV  GK    FPLVVWQTG
Sbjct:   27 RSLQNFDIAGDR--MPRELIDALARIKRASAAVNQRLGLLPADKANAVIAAADEVIAGKHPGEFPLVVWQTG 96          
BLAST of CF504286 vs. ExPASy Swiss-Prot
Match: FUMC_CAMJE (Fumarate hydratase class II OS=Campylobacter jejuni GN=fumC PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.867e-11
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTG 213
            RS +NF IG E+  MP+ ++ AF  LKK  A VN + G LD A   AI+QA  E+  GK +D+FPL +WQTG
Sbjct:   27 RSFENFKIGCEK--MPKVLIYAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTG 96          
The following BLAST results are available for this feature:
BLAST of CF504286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
FUMC_NITEU2.597e-1151.39Fumarate hydratase class II OS=Nitrosomonas europa... [more]
FUMC_BACHD2.597e-1154.17Fumarate hydratase class II OS=Bacillus halodurans... [more]
FUMC_NEIMA5.785e-1148.61Fumarate hydratase class II OS=Neisseria meningiti... [more]
FUMC_RALSO9.867e-1151.39Fumarate hydratase class II OS=Ralstonia solanacea... [more]
FUMC_CAMJE9.867e-1150.00Fumarate hydratase class II OS=Campylobacter jejun... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-775 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504286 ID=CF504286; Name=CF504286; organism=Citrus sinensis; type=EST; length=233bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGGGCACTCAGAGTAATATG
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