CF504289

Overview
NameCF504289
Unique NameCF504289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1476 contig Csv1_Contig1476:60..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504289 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.298e-15
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  161 WCVCKDGVGDPVLQKALDYACG-AGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGCSY 412
            WCV K+   D  LQ A+++ACG  GADC PI   GPC +P  V+   S+  N+Y+ + G+   +C+F+ +A + + +PS   C Y
Sbjct:   41 WCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKY 125          
BLAST of CF504289 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.358e-13
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  149 STANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTAGCSY 412
            S+ +WC+      +  L+ ALD+ACG G  DC  I  + PC+ P+T+ +H S+  NSYFQ+      +C F G+      DPS   C Y
Sbjct:  365 SSNSWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKCIY 453          
The following BLAST results are available for this feature:
BLAST of CF504289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E13L1_ARATH4.298e-1538.82Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1313_ARATH2.358e-1337.08Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-778 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504289 ID=CF504289; Name=CF504289; organism=Citrus sinensis; type=EST; length=540bp
CTTAGCTGCTGTGTGTGTTGTGACAAACTTTTCTCGGAGCCAAACAAGCA
AGTATTTGTTATTATTATCTCTTCTCTAAGCTTCTTTTGCTCATTCAGTG
ATGGCTGTTTTGGTGCTTTTAGCTCTCTTCCTTGGCTTCACTGGGCATTC
AACTGCAAACTGGTGTGTTTGCAAAGATGGAGTGGGTGACCCAGTTTTAC
AAAAAGCTTTGGACTATGCTTGTGGAGCTGGGGCTGATTGTAACCCTATC
CATTCCAATGGGCCTTGTTACAACCCCAACACTGTCAAAGCTCACTGCAG
TTATGCTGTCAACAGCTATTTCCAGAGAAAGGGTCAAGCTCAAGGCTCTT
GTGATTTTTCCGGAAGTGCAACCGTTGCCACTACCGATCCCAGCACTGCT
GGCTGTTCTTATCCTTCAAGTGCCAGCACTTCAGGCACCACCTCAACAAC
ACCAGTCACAGGTACTCCAGGCACAACCACACCCACAACAACTCCGTCCA
CTACCACTCCAACGACTAACACACCAGGCAGCACCACACC
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